View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_115 (Length: 248)

Name: NF3892_low_115
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_115
NF3892_low_115
[»] chr2 (2 HSPs)
chr2 (73-190)||(8019528-8019645)
chr2 (17-59)||(8019760-8019802)
[»] chr3 (14 HSPs)
chr3 (76-145)||(28183439-28183508)
chr3 (73-219)||(17746683-17746838)
chr3 (73-219)||(19048003-19048158)
chr3 (73-122)||(28081438-28081487)
chr3 (73-145)||(28147234-28147307)
chr3 (73-138)||(27974226-27974291)
chr3 (161-208)||(28001872-28001919)
chr3 (89-136)||(28482365-28482412)
chr3 (89-136)||(28511177-28511224)
chr3 (76-122)||(27918067-27918113)
chr3 (73-114)||(28053208-28053249)
chr3 (73-114)||(28063633-28063674)
chr3 (73-117)||(18026977-18027021)
chr3 (73-117)||(27392719-27392763)
[»] scaffold0257 (1 HSPs)
scaffold0257 (93-145)||(17021-17073)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 8019645 - 8019528
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaaaaggttgttga 172  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019645 tccacattcctcctcaattcctgcaataaataaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaaaaggttgttga 8019546  T
Q  173 gatatttgatatactaga 190  Q
    ||||||||||||||||||    
T  8019545 gatatttgatatactaga 8019528  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 8019802 - 8019760
Alignment:
Q  17 cattcttcgattctcatcttaagtaagtgaggtagacatctta 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  8019802 cattctttgattctcatcttaagtaagtgaggtagacatctta 8019760  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 28183508 - 28183439
Alignment:
Q  76 acattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 145  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  28183508 acattcccactcaattcctgcaataaatgaatgggaaataaacacatgcataaaataagaataacaaagt 28183439  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 17746683 - 17746838
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt--------acaatagagatgg-taaaa 163  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||   |||  ||||||||||| ||||        |||||||||||   |||||    
T  17746683 tccacatccccactcaattcctgcaataaatgaatgagaaataaacacacatataaaataagaataacaaagtctgtaagtacaatagagatatataaaa 17746782  T
Q  164 ggttgttgagatatttgatatactagagtgtttattcaaactcacaagttctctct 219  Q
    ||||||  ||||||||||||||| |||||||| |||||||||||||  ||||||||    
T  17746783 ggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttctctct 17746838  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 19048003 - 19048158
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt--------acaatagagatgg-taaaa 163  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||   |||  ||||||||||| ||||        |||||||||||   |||||    
T  19048003 tccacatccccactcaattcctgcaataaatgaatgagaaataaacacacatataaaataagaataacaaagtctgtaagtacaatagagatatataaaa 19048102  T
Q  164 ggttgttgagatatttgatatactagagtgtttattcaaactcacaagttctctct 219  Q
    ||||||  ||||||||||||||| |||||||| |||||||||||||  ||||||||    
T  19048103 ggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttctctct 19048158  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 28081487 - 28081438
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacat 122  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28081487 tccacattcccactcaattcctgcaataaatgaatgggaaataaacacat 28081438  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 28147307 - 28147234
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaacac-atgcatatgataagaataaccaagt 145  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||  ||||||||||| ||||    
T  28147307 tccacattcccactcaattcctgtaataaatgaatgggaaataaacacaatgcataaaataagaataacaaagt 28147234  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 27974291 - 27974226
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaata 138  Q
    ||||||||||| |||||||||| || |||| ||||| ||||||||||||||||||  |||||||||    
T  27974291 tccacattcccactcaattcctacagtaaacgaatgagaaataaacacatgcataaaataagaata 27974226  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 28001919 - 28001872
Alignment:
Q  161 aaaggttgttgagatatttgatatactagagtgtttattcaaactcac 208  Q
    ||||||||| ||||||||| ||||||||||||||  ||||||||||||    
T  28001919 aaaggttgtggagatatttaatatactagagtgtcgattcaaactcac 28001872  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 28482365 - 28482412
Alignment:
Q  89 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 136  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28482365 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28482412  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 28511177 - 28511224
Alignment:
Q  89 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 136  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28511177 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28511224  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 27918113 - 27918067
Alignment:
Q  76 acattccccctcaattcctgcaataaatgaatgggaaataaacacat 122  Q
    |||||||| ||||| ||||| |||||| |||||||||||||||||||    
T  27918113 acattcccactcaaatcctgtaataaacgaatgggaaataaacacat 27918067  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 28053249 - 28053208
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaat 114  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  28053249 tccacaatcccactcaattcctgcaataaatgaatgtgaaat 28053208  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 28063674 - 28063633
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaat 114  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  28063674 tccacaatcccactcaattcctgcaataaatgaatgtgaaat 28063633  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 18026977 - 18027021
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaa 117  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||    
T  18026977 tccacattcccactccattcctgccacaaatgaatgggaaataaa 18027021  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 27392719 - 27392763
Alignment:
Q  73 tccacattccccctcaattcctgcaataaatgaatgggaaataaa 117  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||    
T  27392719 tccacattcccgctcgattcctgccacaaatgaatgggaaataaa 27392763  T

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Target: scaffold0257 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 17073 - 17021
Alignment:
Q  93 ctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 145  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||| ||||    
T  17073 ctgcaataaatgaatgggaaataaacacatgtataaaataagaataacaaagt 17021  T

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