View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_121 (Length: 239)

Name: NF3892_low_121
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_121
NF3892_low_121
[»] chr4 (1 HSPs)
chr4 (1-224)||(54294604-54294827)
[»] chr6 (8 HSPs)
chr6 (35-145)||(29300419-29300529)
chr6 (73-144)||(34274414-34274485)
chr6 (35-129)||(25490554-25490647)
chr6 (73-165)||(32960337-32960428)
chr6 (57-145)||(26087228-26087313)
chr6 (73-145)||(34257918-34257995)
chr6 (56-142)||(34278098-34278182)
chr6 (57-142)||(25526522-25526607)
[»] chr8 (1 HSPs)
chr8 (62-126)||(5709559-5709623)
[»] chr3 (1 HSPs)
chr3 (62-126)||(2885796-2885860)
[»] chr2 (1 HSPs)
chr2 (62-126)||(16186188-16186252)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 54294827 - 54294604
Alignment:
Q  1 taccttgtagacaaagtgactcgtcaattgtgtttatcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttattttgaat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54294827 taccttgtagacaaagtgactcgtcaattgtgtttgtcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttattttgaat 54294728  T
Q  101 ggttactctcattttatttgcaaacttatgtggtttctatatcaaaagaatttaacttttgccttgtgagcaacaaatttctacattaactttctttaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  54294727 ggttactctcattttatttgcaaacttatgtggtttctatatcaaaagaatttaaatttttccttgtgagcaacaaatttctacattaactttctttaca 54294628  T
Q  201 ttctgccagtgatatctctattct 224  Q
    ||||||||||||||||||||||||    
T  54294627 ttctgccagtgatatctctattct 54294604  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 29300419 - 29300529
Alignment:
Q  35 tatcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggt 134  Q
    ||||||||||| | | || | ||||| |||||||||||| ||| |||| |||||||||||||||||| |||||||  |||||||| ||||||||| |||     
T  29300419 tatcacaattattgtcaagtaaactaggaaactacttgaacttgcttttgcatttttattttgaatgtttactcttgttttattttcaaacttatctggc 29300518  T
Q  135 ttctatatcaa 145  Q
    |||||||||||    
T  29300519 ttctatatcaa 29300529  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 34274485 - 34274414
Alignment:
Q  73 atcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctatatca 144  Q
    ||||| |||| |||||||||||||||||| |||||  |||||||||||||||||| ||||||||||||||||    
T  34274485 atcttgcttttgcatttttattttgaatgtttacttacattttatttgcaaacttgtgtggtttctatatca 34274414  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 25490554 - 25490647
Alignment:
Q  35 tatcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttat 129  Q
    ||||||||||| | | ||||  |||||||| |||||||||||| |||| ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  25490554 tatcacaattattgtcaattatactaagaatctacttgatcttgcttttgcatttttaatttgaat-gttactctcgttttatttgcaaacttat 25490647  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 32960428 - 32960337
Alignment:
Q  73 atcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctatatcaaaagaatttaacttttgcctt 165  Q
    ||||| |||| ||||||||||||| |||| | ||||||||||||||||||||||||  |||||| || |||||| ||| | ||||||||||||    
T  32960428 atcttgcttttgcatttttattttaaatgttcactctcattttatttgcaaacttagttggtttttaaatcaaatgaa-tgaacttttgcctt 32960337  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 26087313 - 26087228
Alignment:
Q  57 actaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctatatcaa 145  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||  |||  ||| ||||||| |||||| ||| |||||||||||||||    
T  26087313 actaagaaactacttgatcttgcttttgcatttttagtttgaat-ctta--ctcgttttattcgcaaacatatctggtttctatatcaa 26087228  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 34257995 - 34257918
Alignment:
Q  73 atcttactttagcatttttattttgaat-----ggttactctcattttatttgcaaacttatgtggtttctatatcaa 145  Q
    ||||| |||| |||||||||||||||||     | |||||||||| |||||||||||||| |||||||||||||||||    
T  34257995 atcttgcttttgcatttttattttgaatataatgtttactctcatcttatttgcaaacttgtgtggtttctatatcaa 34257918  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 34278182 - 34278098
Alignment:
Q  56 aactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctatat 142  Q
    ||||| || ||| ||||||||| |||| |||||||| |||  |||| |||||||| |||||||||||||||||| ||| ||||||||    
T  34278182 aactatgacactgcttgatcttgcttttgcattttttttt--aatgtttactctcgttttatttgcaaacttatttggcttctatat 34278098  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 25526607 - 25526522
Alignment:
Q  57 actaagaaactacttgatc-ttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctatat 142  Q
    ||||||||||||||||||| || | || ||||||||| ||||||| || |||||| ||||||||| ||||| ||  |||||||||||    
T  25526607 actaagaaactacttgatctttgcatttgcatttttagtttgaat-gtcactctcgttttatttgaaaactaatcaggtttctatat 25526522  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 5709623 - 5709559
Alignment:
Q  62 gaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaact 126  Q
    |||||||||||||||| |||| ||||||||||||| |||| || | ||| |||||||||||||||    
T  5709623 gaaactacttgatcttgcttttgcatttttatttttaatgttttcgctcgttttatttgcaaact 5709559  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 2885796 - 2885860
Alignment:
Q  62 gaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaact 126  Q
    |||||||||||||||| |||| ||||||||||||| |||| || | ||| |||||||||||||||    
T  2885796 gaaactacttgatcttgcttttgcatttttatttttaatgttttcgctcgttttatttgcaaact 2885860  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 16186252 - 16186188
Alignment:
Q  62 gaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaact 126  Q
    |||||||||||||||| |||| ||||||||||||| |||| || | ||| |||||||||||||||    
T  16186252 gaaactacttgatcttgcttttgcatttttatttttaatgttttcgctcgttttatttgcaaact 16186188  T

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