View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_123 (Length: 239)
Name: NF3892_low_123
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_123 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 28677218 - 28677439
Alignment:
| Q |
18 |
ttcagattactcacaaatttgtgagaatggtcatataatgaagacaagttaccaaaagtgttttaacagatttcctttcacaaaagaaaatgttcagatg |
117 |
Q |
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| T |
28677218 |
ttcagattactcacaaatttgtgagaatggtcatataatgaagacaagttaccaaaagtgttttaacagatttcctttcacaaaagaaaatgttcagatg |
28677317 |
T |
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| Q |
118 |
tgttttaacaaagaaacaaatagatattcttacatgatgataaaagaacaatgtttaaaagaaattaaactcacttcggtagctttatcatatatatcat |
217 |
Q |
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| T |
28677318 |
tgttttaacaaagaaacaaatagatattcttacatgatgataaaagaacaatgtttaaaagaaattaaactcacttcggtagctttatcatatatatcat |
28677417 |
T |
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| Q |
218 |
tgaacaaatcttcttgaatgtt |
239 |
Q |
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| T |
28677418 |
tgaacaaatcttcttgaatgtt |
28677439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 28677087 - 28677115
Alignment:
| Q |
17 |
attcagattactcacaaatttgtgagaat |
45 |
Q |
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| T |
28677087 |
attcagattactcacaaatttgtgagaat |
28677115 |
T |
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