View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_125 (Length: 239)
Name: NF3892_low_125
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_125 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 29819040 - 29818819
Alignment:
| Q |
18 |
cttcggtggagaggatgtcctcttaagactctagcgcaaacaaatcagctggatgaagttgttcacattaaattatctcatagcaaaatcgaaaaacttt |
117 |
Q |
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| T |
29819040 |
cttcggtggagaggatgtcctcttaagactctagcgcaaacaaatcagctggatgaagttgttgacattaaattatctcatagcaaaatcgaaaaacttt |
29818941 |
T |
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| Q |
118 |
ggcacggagtatatgtaaggtccttttacaaagagatctataaagttttat-actgtgacatttgatgctgataatcttttcatattttacaattttgag |
216 |
Q |
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| T |
29818940 |
ggcacggagtatatgtaaggtccttttacaaagagatctataaagttttatcactgtgacatttgatgctgataatcttttcatattttacaattttgag |
29818841 |
T |
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| Q |
217 |
cagtttatggaaaagctgaagt |
238 |
Q |
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| T |
29818840 |
cagtttatggaaaagctgaagt |
29818819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 29827282 - 29827071
Alignment:
| Q |
18 |
cttcggtggagaggatgtcctcttaagactctagcgcaaacaaatcagctggatgaagttgttcacattaaattatctcatagcaaaatcgaaaaacttt |
117 |
Q |
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| T |
29827282 |
cttcggtggagaggatgtcctttaaagactcttgcacaaacaaatcaactggatgaagttgttgacattaaactatctcatagccaacttgaactacttt |
29827183 |
T |
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| Q |
118 |
ggcacggagtatatgtaaggtccttttacaaagagatctataaagttttat-actgtgacatttgatgctgataatcttttcatattttacaattttgag |
216 |
Q |
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| T |
29827182 |
ggcaaggaataaatgtaagtcacttctactaatagctctattaagttttataaccatgacatttgatgctgata----------attttacaattttgag |
29827093 |
T |
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| Q |
217 |
cagtttatggaaaagctgaagt |
238 |
Q |
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| T |
29827092 |
cagtttatggaaaatctgaagt |
29827071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 29596902 - 29596714
Alignment:
| Q |
54 |
caaacaaatcagctggatgaagttgttcacattaaattatctcatagcaaaatcgaaaaactttggcacggagtatatgtaaggtccttttacaaagaga |
153 |
Q |
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| T |
29596902 |
caaacaactcaactggatgaagttgttgacattaaattatctcacagcaaaattcaacacctttggcaaggaataaaggtaagacactctttcatcgaga |
29596803 |
T |
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| Q |
154 |
--tctataaagttttat-actgtgacatttgatgctgataatcttttcata-ttttacaattttgagcagtttatggaaaagctgaagt |
238 |
Q |
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| T |
29596802 |
cctctattaaatttcatcaccatgacgattgatgctgataactttttcatatttttacaattttgagcagtttataggaaagttgaagt |
29596714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 29573138 - 29573324
Alignment:
| Q |
56 |
aacaaatcagctggatgaagttgttcacattaaattatctcatagcaaaatcgaaaaactttggcacggagtatatgtaa--ggtccttttacaaagaga |
153 |
Q |
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||||| ||| || |||||| ||||| |||||| |||||||||||||||||| ||| |||| ||||| |||||| | |||| | |||| || |||| |
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| T |
29573138 |
aacaactcaacttgatgaacttgttgacattacattatctcatagcaaaattgaacaactctggcaaggagtaaaggtaatagactctttgaccaagaac |
29573237 |
T |
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| Q |
154 |
tctat-aaagttttatactgtgacatttgatgctgataatcttttcatatttt-acaattttgagcagtttatggaaaagctgaagt |
238 |
Q |
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| T |
29573238 |
tctattaaagcttaccattatgacatttgatgctgataacttgttcacatttttacaactttgagcagtttatggaaaagatgaagt |
29573324 |
T |
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