View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_low_128 (Length: 237)
Name: NF3892_low_128
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_128 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 33609300 - 33609096
Alignment:
| Q |
15 |
agaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33609300 |
agaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatac |
33609201 |
T |
|
| Q |
115 |
tccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactgagg |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33609200 |
tccctttttaatatggttttaaagggctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactgagg |
33609101 |
T |
|
| Q |
215 |
atcct |
219 |
Q |
| |
|
||||| |
|
|
| T |
33609100 |
atcct |
33609096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 33618468 - 33618271
Alignment:
| Q |
22 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatattcccttt |
121 |
Q |
| |
|
|||||||| |||||||| || || || || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618468 |
aagaggttgggtgaataaaaggctacaatattgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattcccttt |
33618369 |
T |
|
| Q |
122 |
ttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactgaggatcct |
219 |
Q |
| |
|
|||||||||||||||||| |||||| | || ||||| |||| |||| | |||| ||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
33618368 |
ttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcct |
33618271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 33627683 - 33627497
Alignment:
| Q |
22 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatattcccttt |
121 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| |||| |||||| ||||| |||||||| | ||||| ||||||||||||||||| ||||||| |
|
|
| T |
33627683 |
aagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttt |
33627584 |
T |
|
| Q |
122 |
ttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaa |
208 |
Q |
| |
|
| |||||||||||||||| |||||| | | |||||||||| || | ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33627583 |
tgaatatggttttaaagggctcttgttgcagtgattttgcaatttttgttgacctaataagttcttctaactcaggttcaatatcaa |
33627497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 33588577 - 33588484
Alignment:
| Q |
22 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatatt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
33588577 |
aagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatatt |
33588484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 33595749 - 33595656
Alignment:
| Q |
22 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatatt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
33595749 |
aagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatatt |
33595656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 33602880 - 33602787
Alignment:
| Q |
22 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatatt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
33602880 |
aagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatatt |
33602787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 33622657 - 33622460
Alignment:
| Q |
22 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatattcccttt |
121 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||| |||| |||| | | |||||| || ||||| | | |||||| |||| || |||| |
|
|
| T |
33622657 |
aagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctcttt |
33622558 |
T |
|
| Q |
122 |
ttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactgaggatcct |
219 |
Q |
| |
|
||| |||||||||||||| |||| || || |||||| ||| || | ||||||||||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33622557 |
ttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttcaaactcaggttcaatatcaatggaggatcct |
33622460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 33563069 - 33562979
Alignment:
| Q |
25 |
aggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatatt |
115 |
Q |
| |
|
|||||||||| |||||| || || ||||||||||| || |||||||| |||| || || |||| ||| |||||||||||||||||||||| |
|
|
| T |
33563069 |
aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt |
33562979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University