View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_13 (Length: 513)
Name: NF3892_low_13
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 46 - 499
Target Start/End: Complemental strand, 5835174 - 5834740
Alignment:
| Q |
46 |
agtggaaggaatctaaggaccaagtatcatgctttcttgctatgagacggttctaagtttgtttttctccaatatacataagannnnnnnnnnnnnnnnc |
145 |
Q |
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| T |
5835174 |
agtggaaggaatctaaggaccaagtatcatgctttcttgctatgagacggttctaagtttgtttttctccaatatacataagattttttttcttttt--c |
5835077 |
T |
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| Q |
146 |
tatttaattttccaagtatcaattttcaagaatattcctagaagccatttactagtacagaataacaagtacaagcagtgttgaaggctttccatttaga |
245 |
Q |
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| T |
5835076 |
tatttaattttccaagtatcaattttcaagaatattcctagaagccatttactagtacagaataacaagtacaagcagtgttgaaggctttccatttaga |
5834977 |
T |
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| Q |
246 |
atctcgtatgtttgctagctcaagtagtgaaaataattatctagtgaaaatatttatctgtaagggaaatattcttcaattttccacctccataatctaa |
345 |
Q |
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| T |
5834976 |
atctcgtatgtttgctagctcaagtagtgaaaata-----------------tttatctgtaagggaaatattcttcaattttccacctccataatctaa |
5834894 |
T |
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| Q |
346 |
ttccccccaaaattgacttataaagatgctagttctttgtcaagaaattccaatatttttgcagtcaatttcattagttgtggttttagttagaatttgc |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5834893 |
ttccccccaaaattgacttataaagatgctagttctttgtcaagaaattccattatttgtgcagtcaatttcattagttgtggttttagttagaatttgc |
5834794 |
T |
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| Q |
446 |
agtgcaaatatagaaacaaaacctagaattaagggtatgactcagtttactgat |
499 |
Q |
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| T |
5834793 |
agtgcaaatatagaaacaaaacctagaattaagggtatgactcagtttactgat |
5834740 |
T |
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