View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_131 (Length: 237)
Name: NF3892_low_131
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_131 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 3883428 - 3883510
Alignment:
| Q |
139 |
cttgcatttattggaatagaagaggtggttgcagttaaaacaagcggtccgtaaataaattcgtggatttctgtattgtattt |
221 |
Q |
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| T |
3883428 |
cttgcacttattggaatagaagaggtggttgcagttaaaacaaacggtccgtaaataaattcgtggatttttgtattgtattt |
3883510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3883301 - 3883367
Alignment:
| Q |
1 |
tgtagtgttttttaaataataataaaattaatataagttctactttccacaatacaggctggttagt |
67 |
Q |
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| T |
3883301 |
tgtagtgttttttaaataataataaaattaatataagttctactttccacaatacaggctagttagt |
3883367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9454983 - 9455049
Alignment:
| Q |
1 |
tgtagtgttttttaaataataataaaattaatataagttctactttccacaatacaggctggttagt |
67 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9454983 |
tgtagtgttttttaaataataataaaattaatataagttctactttccacaatacaggctggttagt |
9455049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 9455119 - 9455199
Alignment:
| Q |
139 |
cttgcatttattggaatagaagaggtggttgcagttaaaacaagcggtccgtaaataaattcgtggatttctgtattgtattt |
221 |
Q |
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|||||| ||||||||||||| | |||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||||| |
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| T |
9455119 |
cttgcacttattggaatagaggtggtggttg-agttaaaacaagcggtccataaacaaattcgtggattt-tgtattgtattt |
9455199 |
T |
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