View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_135 (Length: 235)
Name: NF3892_low_135
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_135 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32552765 - 32552990
Alignment:
| Q |
1 |
gctgatgtcaatcagccaggttctcgggatacaaatagtccatcaattgttgcagtggttgccactactaactggccagctgcaaatcgctatgcagcac |
100 |
Q |
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| T |
32552765 |
gctgatgtcaatcatccaggttcccgggacacaaatagtccatcaattgttgcagtggttgccactactaactggccagctgcaaatcgctatgcagcac |
32552864 |
T |
|
| Q |
101 |
gtgtttgcgctcaagagcattgtacagagaaaattttgaattttggagagatttgccttgaccttgttagacattatgagaagttgaacaaagtcaggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32552865 |
gtgtttgcgctcaagagcattgtacagagaaaattttgaattttggagagatttgccttgaccttgttagacattatgagaagttgaacaaagtcaggcc |
32552964 |
T |
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| Q |
201 |
ccaaaaaattgttatctttcgtgatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32552965 |
ccaaaaaattgttatctttcgtgatg |
32552990 |
T |
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Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 8190610 - 8190775
Alignment:
| Q |
55 |
gtggttgccactactaactggccagctgcaaatcgctatgcagcacgtgtttgcgctcaagagcattgtacagagaaaattttgaattttggagagattt |
154 |
Q |
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| T |
8190610 |
gtggttaccactactacctggccagctgcaaatcgctatgcagcacgtgtttgtgctcaagagcagcgaacgaagaaaattttgaattttggagaagttt |
8190709 |
T |
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| Q |
155 |
gccttgaccttgttagacattatgagaagttgaacaaagtcaggccccaaaaaattgttatctttc |
220 |
Q |
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| T |
8190710 |
gccctgaccttgttacacattatgagaagttaaacaaagtcaggtcccaaaaaactgttatctttc |
8190775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 10754244 - 10754075
Alignment:
| Q |
1 |
gctgatgtcaatcagccaggttctcgggatacaaatagtccatcaattgttgcagtggttgccactactaactggccagctgcaaatcgctatgcagcac |
100 |
Q |
| |
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|||||||||||||| || ||||| || || | || ||||||||||||||||| |||||||| || | ||||||||| ||||||||||| ||||| |||| |
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| T |
10754244 |
gctgatgtcaatcaccctggttcgcgagacaacaagagtccatcaattgttgctgtggttgcaaccattaactggcctgctgcaaatcgttatgcggcac |
10754145 |
T |
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| Q |
101 |
gtgtttgcgctcaagagcattgtacagagaaaattttgaattttggagagatttgccttgaccttgttag |
170 |
Q |
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| T |
10754144 |
gtgtttgcccacaattcaatcgtagtgagaaaatattgaactttggggagatttgtgttgagcttgttag |
10754075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 14144261 - 14144198
Alignment:
| Q |
127 |
gagaaaattttgaattttggagagatttgccttgaccttgttagacattatgagaagttgaaca |
190 |
Q |
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|||||||||| ||||| ||||| |||||| |||| |||||| || |||||||||||||||||| |
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| T |
14144261 |
gagaaaatttcaaatttcggagaaatttgctttgatcttgttggaaattatgagaagttgaaca |
14144198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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