View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_14 (Length: 513)

Name: NF3892_low_14
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_14
NF3892_low_14
[»] chr7 (10 HSPs)
chr7 (88-271)||(32414573-32414756)
chr7 (334-497)||(32414347-32414510)
chr7 (60-218)||(30597147-30597311)
chr7 (67-103)||(6845249-6845285)
chr7 (70-104)||(6849822-6849856)
chr7 (67-104)||(6890258-6890295)
chr7 (145-197)||(6890159-6890211)
chr7 (145-211)||(6849709-6849775)
chr7 (141-218)||(45493091-45493168)
chr7 (145-193)||(6845153-6845201)
[»] chr2 (8 HSPs)
chr2 (60-225)||(43863044-43863215)
chr2 (141-225)||(43866604-43866688)
chr2 (138-264)||(38990017-38990144)
chr2 (401-455)||(7227489-7227543)
chr2 (139-222)||(43874280-43874363)
chr2 (63-101)||(38990187-38990225)
chr2 (63-104)||(43866520-43866561)
chr2 (63-111)||(43874198-43874246)
[»] chr4 (11 HSPs)
chr4 (137-241)||(52187766-52187870)
chr4 (63-124)||(36590344-36590405)
chr4 (147-246)||(36910479-36910578)
chr4 (147-213)||(18365178-18365244)
chr4 (147-213)||(36597681-36597747)
chr4 (138-208)||(36655974-36656044)
chr4 (147-224)||(18084001-18084078)
chr4 (147-218)||(36630268-36630339)
chr4 (147-218)||(36664935-36665006)
chr4 (67-124)||(36627073-36627130)
chr4 (148-224)||(36636001-36636077)
[»] chr3 (21 HSPs)
chr3 (67-225)||(777179-777343)
chr3 (147-218)||(7119797-7119868)
chr3 (69-241)||(7034139-7034317)
chr3 (76-124)||(7119981-7120029)
chr3 (366-441)||(777417-777492)
chr3 (141-236)||(8032351-8032446)
chr3 (67-109)||(477086-477128)
chr3 (367-445)||(13490164-13490242)
chr3 (63-110)||(1187635-1187682)
chr3 (72-111)||(1205396-1205435)
chr3 (72-111)||(1303667-1303706)
chr3 (137-196)||(481953-482015)
chr3 (73-124)||(7127213-7127264)
chr3 (58-101)||(7179049-7179092)
chr3 (63-101)||(8399991-8400029)
chr3 (90-124)||(13489899-13489933)
chr3 (143-212)||(7127014-7127083)
chr3 (145-196)||(476993-477047)
chr3 (366-446)||(7058043-7058123)
chr3 (76-124)||(7103050-7103098)
chr3 (145-213)||(13460643-13460711)
[»] chr5 (7 HSPs)
chr5 (25-235)||(7022962-7023176)
chr5 (64-221)||(28092037-28092200)
chr5 (145-218)||(25216877-25216950)
chr5 (145-218)||(25281032-25281105)
chr5 (138-218)||(25070180-25070260)
chr5 (138-218)||(25128155-25128235)
chr5 (66-123)||(7975746-7975803)
[»] scaffold0438 (2 HSPs)
scaffold0438 (141-236)||(6271-6369)
scaffold0438 (66-104)||(6409-6447)
[»] chr8 (9 HSPs)
chr8 (141-236)||(26291889-26291987)
chr8 (141-236)||(26305146-26305244)
chr8 (141-236)||(26338501-26338599)
chr8 (138-218)||(35336714-35336794)
chr8 (141-218)||(27700906-27700983)
chr8 (67-122)||(27700733-27700788)
chr8 (66-104)||(26292027-26292065)
chr8 (66-104)||(26305284-26305322)
chr8 (66-104)||(26338639-26338677)
[»] chr6 (3 HSPs)
chr6 (148-213)||(33839361-33839426)
chr6 (76-124)||(33839157-33839205)
chr6 (366-441)||(7174641-7174716)
[»] chr1 (3 HSPs)
chr1 (145-218)||(28927456-28927529)
chr1 (149-236)||(42601950-42602037)
chr1 (141-218)||(14287949-14288026)
[»] scaffold0210 (1 HSPs)
scaffold0210 (178-218)||(15280-15320)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 6e-97; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 88 - 271
Target Start/End: Complemental strand, 32414756 - 32414573
Alignment:
Q  88 ttttgaagcaaaaagtcgaccattccatcaggtatggttaggtaatttcttattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaata 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414756 ttttgaagcaaaaagtcgaccattccatcaggtatggttaggtaatttcttattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaata 32414657  T
Q  188 aatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaatttatgcaaaccatatttttgacaaaatttatta 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32414656 aatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaatttatgcaaatcatatttttgacaaaatttatta 32414573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 334 - 497
Target Start/End: Complemental strand, 32414510 - 32414347
Alignment:
Q  334 ccgctaaaattttattgaaccaaaccattttgtaaagtacctcaagagtagttgaagaaactattagtgattcaatattagcaagctcaagcagccagtc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32414510 ccgctaaaattttattgaaccaaaccattttgtaaagtacctcaagagaagttgaagaaactattagtgattcaatattaacaagctcaagcagccagtc 32414411  T
Q  434 gagtagaaccaaatgagtatccccatatctctgacgccatttctacgtcaattttcacatgttt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414410 gagtagaaccaaatgagtatccccatatctctgacgccatttctacgtcaattttcacatgttt 32414347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 30597147 - 30597311
Alignment:
Q  60 tacgatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt-aggtaat-----ttcttattttcagtgacttc 153  Q
    |||||| ||||||||||||||||||||||||||||| |||||||  | | |||||| ||| |||| | |||  ||     || | | ||| ||| |||||    
T  30597147 tacgatttcaacctttgctgagggtgagttttgaagtaaaaagtacaacgttccattaggcatggatgagggtatgcgcattttcactttaagtaacttc 30597246  T
Q  154 aagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||||||||||||| | ||||  |||||||||||||||||||| || || ||||||||||||||    
T  30597247 aagttacacaaggaatggaactcaaccttcaataaatcaggaactaacgagagaacctaatcaat 30597311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 6845285 - 6845249
Alignment:
Q  67 tcaacctttgctgagggtgagttttgaagcaaaaagt 103  Q
    |||||||||||||||||||||||||||||||||||||    
T  6845285 tcaacctttgctgagggtgagttttgaagcaaaaagt 6845249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 6849856 - 6849822
Alignment:
Q  70 acctttgctgagggtgagttttgaagcaaaaagtc 104  Q
    |||||||||||||||||||||||||||||||||||    
T  6849856 acctttgctgagggtgagttttgaagcaaaaagtc 6849822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 6890295 - 6890258
Alignment:
Q  67 tcaacctttgctgagggtgagttttgaagcaaaaagtc 104  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6890295 tcaacctttgttgagggtgagttttgaagcaaaaagtc 6890258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 6890211 - 6890159
Alignment:
Q  145 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaac 197  Q
    |||||||||||| ||||||||||| | ||||  ||||||||||||||||||||    
T  6890211 agtgacttcaagctacacaaggaatgaaactcaaccttcaataaatcaggaac 6890159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 6849775 - 6849709
Alignment:
Q  145 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacct 211  Q
    |||||||||||||  ||||||||| | || |  |||||||||||||||||||| ||||| |||||||    
T  6849775 agtgacttcaagtcccacaaggaatggaattcaaccttcaataaatcaggaactaaggagagaacct 6849709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 45493091 - 45493168
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||||||||||||| |||| ||| ||||| ||||  | ||||||||||||||| |   |||| ||||||||||||||    
T  45493091 tttcagtgacttcaaattacgcaaagaagggaactcgatcttcaataaatcaggtattgaggagagaacctaatcaat 45493168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 6845201 - 6845153
Alignment:
Q  145 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcag 193  Q
    ||||||||||| |||||||||||| | ||||  ||||||||||||||||    
T  6845201 agtgacttcaaattacacaaggaatggaactcaaccttcaataaatcag 6845153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 43863044 - 43863215
Alignment:
Q  60 tacgatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt--aggta--atttctt--attttcagtgacttc 153  Q
    |||||||||||||||||  |||||||||||||||| ||||||||| |||||| | ||| |||| | |  |||||  |   |||  |||||||||||||||    
T  43863044 tacgatgtcaacctttgtcgagggtgagttttgaatcaaaaagtctaccatttcgtcacgtatcgatgaaggtatgaccactttaattttcagtgacttc 43863143  T
Q  154 aagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaag 225  Q
    ||||||||||||||||| | ||  |||||||||||| || |||| ||||||||||||||| |||||||||||    
T  43863144 aagttacacaaggaagggagctctaccttcaataaaccacgaactaaggaaagaacctaagcaatcaggaag 43863215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 43866604 - 43866688
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaag 225  Q
    |||||| |||||||||||| |||||||||| ||||  ||||||||||||||| |||| |||||||| |||||| |||||||||||    
T  43866604 tttcagcgacttcaagttaaacaaggaagggaactcaaccttcaataaatcacgaactaaggaaagcacctaagcaatcaggaag 43866688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 264
Target Start/End: Complemental strand, 38990144 - 38990017
Alignment:
Q  138 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaa 237  Q
    ||||||||| |||||||||||| |||||| | | | ||   ||||||||||||||||||  || |||||||||||| ||||||||||| |||| |||||     
T  38990144 tattttcagggacttcaagttatacaagggatggagctcagccttcaataaatcaggaaataaagaaagaacctaagcaatcaggaagtattacgatcag 38990045  T
Q  238 ttt-atgcaaaccatatttttgacaaaa 264  Q
    ||| ||||||  ||||||||||| ||||    
T  38990044 tttaatgcaagtcatatttttgaaaaaa 38990017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 7227543 - 7227489
Alignment:
Q  401 tgattcaatattagcaagctcaagcagccagtcgagtagaaccaaatgagtatcc 455  Q
    ||||||||||||||||||||||| |||||||  || |||||||||| ||||||||    
T  7227543 tgattcaatattagcaagctcaatcagccagctgaatagaaccaaaggagtatcc 7227489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 43874280 - 43874363
Alignment:
Q  139 attttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcagg 222  Q
    |||||| ||||||||||||||||||||||| | | ||  ||| |||| |||| | |||| |||| |||||||||| ||||||||    
T  43874280 attttcggtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatcagg 43874363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 38990225 - 38990187
Alignment:
Q  63 gatgtcaacctttgctgagggtgagttttgaagcaaaaa 101  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  38990225 gatgtcaacctttgccgagggtgagttttgaatcaaaaa 38990187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 43866520 - 43866561
Alignment:
Q  63 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtc 104  Q
    ||||||||||||||  |||||||||||||||| |||||||||    
T  43866520 gatgtcaacctttgtcgagggtgagttttgaatcaaaaagtc 43866561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 43874198 - 43874246
Alignment:
Q  63 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccatt 111  Q
    ||||||||||||||   ||||||||||||||| ||||||||| ||||||    
T  43874198 gatgtcaacctttgtcaagggtgagttttgaatcaaaaagtccaccatt 43874246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 52187870 - 52187766
Alignment:
Q  137 ttattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 236  Q
    |||||||||||||||||||| ||||||||||| | ||||  |||||||||||||||||||| || |||||||||||| |||||| |||| |||| |||||    
T  52187870 ttattttcagtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaactaaagaaagaacctaagcaatcaagaagtattacgatca 52187771  T
Q  237 attta 241  Q
     ||||    
T  52187770 gttta 52187766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 36590344 - 36590405
Alignment:
Q  63 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    ||||||||| | |||||| ||||||||||||| ||||||||| || ||||||||||||||||    
T  36590344 gatgtcaacttctgctgacggtgagttttgaatcaaaaagtccactattccatcaggtatgg 36590405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 36910578 - 36910479
Alignment:
Q  147 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaatttatgcaa 246  Q
    ||||||||||||||| || ||| | || || |||| ||||||||||||||| ||||| |||| ||||  ||| |||| || ||||||||| |||||||||    
T  36910578 tgacttcaagttacataaagaatggaatttaacctccaataaatcaggaactaaggacagaatctaagaaatgaggatgagttaggatcagtttatgcaa 36910479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 18365244 - 18365178
Alignment:
Q  147 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 213  Q
    |||||||||||||||||| ||||  ||||| |||| ||||||||||||||| ||||| |||| ||||    
T  18365244 tgacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 18365178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 36597681 - 36597747
Alignment:
Q  147 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 213  Q
    |||||||||||||||||| ||||  ||||| |||| ||||||||||||||| ||||| |||| ||||    
T  36597681 tgacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 36597747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 36655974 - 36656044
Alignment:
Q  138 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaa 208  Q
    ||||| ||||||||||||||||||||| ||||| | ||| | ||||||||||| |||||| ||||| ||||    
T  36655974 tatttccagtgacttcaagttacacaaagaaggtatcttaaacttcaataaattaggaactaaggagagaa 36656044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 18084078 - 18084001
Alignment:
Q  147 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaa 224  Q
    ||||||||||||||| || ||||| | ||| |||| ||||||||||||||| ||||| |||| |||| |||| |||||    
T  18084078 tgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggacagaatctaagcaataaggaa 18084001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 36630339 - 36630268
Alignment:
Q  147 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    |||| |||||||||| || ||||| | ||| |||| ||||||||||||||||||||| |||| |||| ||||    
T  36630339 tgacctcaagttacaaaaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat 36630268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 36664935 - 36665006
Alignment:
Q  147 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||||||||||||| || ||||| | ||| |||| ||||||||||||||| ||||| |||| |||| ||||    
T  36664935 tgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggagagaatctaagcaat 36665006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 36627073 - 36627130
Alignment:
Q  67 tcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    ||||| ||||| || || |||||||||||||| |||| ||| ||||||||||||||||    
T  36627073 tcaacttttgcagacggcgagttttgaagcaagaagttgactattccatcaggtatgg 36627130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 36636001 - 36636077
Alignment:
Q  148 gacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaa 224  Q
    ||||||||||||||||| ||||||| ||| ||||  | |||||||||||| || || |||| |||| |||| |||||    
T  36636001 gacttcaagttacacaaagaaggcagcttaacctctagtaaatcaggaactaatgagagaatctaaacaattaggaa 36636077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 777179 - 777343
Alignment:
Q  67 tcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt------aggtaatttcttattttcagtgacttcaagttac 160  Q
    ||||||||||| || ||||||||||||| ||| ||||| | |||||| |||||||| | |      |||||  || ||||||||| ||||||||||||||    
T  777179 tcaacctttgccgatggtgagttttgaatcaataagtctatcattccgtcaggtattgatgaagataggtatgtttttattttcaatgacttcaagttac 777278  T
Q  161 acaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaag 225  Q
    ||||| |||  |  |  || ||||||||||||||||||||||||||||||||| |||||| ||||    
T  777279 acaagtaagagagttcaacgttcaataaatcaggaaccaaggaaagaacctaagcaatcaagaag 777343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 7119868 - 7119797
Alignment:
Q  147 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||| ||||    
T  7119868 tgacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaagcaat 7119797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 7034317 - 7034139
Alignment:
Q  69 aacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt-ag-----gtaatttcttattttcagtgacttcaagttacac 162  Q
    |||||||||||||||||||||||||||||||||||| || |||| | ||||||| | | ||     | |  ||| || ||||||| |||||||||||  |    
T  7034317 aacctttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtattgatgagcgtccgaaccttcctactttcagtaacttcaagttatgc 7034218  T
Q  163 aaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaattta 241  Q
    |||||||| | ||  |||||| |||  |||||||| ||||||||||||||| | ||||||||| |||||||||| ||||    
T  7034217 aaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagtattaggatcagttta 7034139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 7120029 - 7119981
Alignment:
Q  76 gctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7120029 gctgaaggtgagttttgaagcaaaaagtcgactattccatcaggtatgg 7119981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 777417 - 777492
Alignment:
Q  366 taaagtacctcaagagtagttgaagaaactattagtgattcaatattagcaagctcaagcagccagtcgagtagaa 441  Q
    |||||||||||||||||| ||||||| ||| | |||||||| ||||||||||||||||  ||||| | ||||||||    
T  777417 taaagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattgagtagaa 777492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 8032351 - 8032446
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 236  Q
    |||||||||||||||||||| ||||||||| ||||  ||| |||||||||||  |    |||||||||||||| |||||| |||| ||||||||||    
T  8032351 tttcagtgacttcaagttacgcaaggaagggaactcaaccgtcaataaatcataatttcaggaaagaacctaagcaatcatgaagtattaggatca 8032446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 477128 - 477086
Alignment:
Q  67 tcaacctttgctgagggtgagttttgaagcaaaaagtcgacca 109  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  477128 tcaacctttgctgagggtgagttttgaagcaaaaagtccacca 477086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 445
Target Start/End: Original strand, 13490164 - 13490242
Alignment:
Q  367 aaagtacctcaagagtagttgaagaaactattagtgattcaatattagcaagctcaagcagccagtcgagtagaaccaa 445  Q
    ||||||||| ||||||||||||||| ||  | | |||||||||||||||||||||||  ||||||| ||| ||||||||    
T  13490164 aaagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaa 13490242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 1187682 - 1187635
Alignment:
Q  63 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccat 110  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  1187682 gatgtgaacctttgccgagggtgagttttgaagcaaaaagtccaccat 1187635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 1205435 - 1205396
Alignment:
Q  72 ctttgctgagggtgagttttgaagcaaaaagtcgaccatt 111  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1205435 ctttgctgagggtgagttttgaagcaaaaagtccaccatt 1205396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 1303667 - 1303706
Alignment:
Q  72 ctttgctgagggtgagttttgaagcaaaaagtcgaccatt 111  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1303667 ctttgctgagggtgagttttgaagcaaaaagtccaccatt 1303706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 482015 - 481953
Alignment:
Q  137 ttattttcagtgacttcaagttac---acaaggaaggcaacttcaccttcaataaatcaggaa 196  Q
    ||||||||||||||||||||||||   |||||||||| | ||| | |||||||||||||||||    
T  482015 ttattttcagtgacttcaagttacacaacaaggaagggagcttaatcttcaataaatcaggaa 481953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 7127264 - 7127213
Alignment:
Q  73 tttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    ||||| || ||||||||||||||||||||||  || ||||||||||||||||    
T  7127264 tttgcagaaggtgagttttgaagcaaaaagtaaactattccatcaggtatgg 7127213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 7179092 - 7179049
Alignment:
Q  58 tatacgatgtcaacctttgctgagggtgagttttgaagcaaaaa 101  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||    
T  7179092 tatatgatgttaacctttgctgatggtgagttttgaagcaaaaa 7179049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 8399991 - 8400029
Alignment:
Q  63 gatgtcaacctttgctgagggtgagttttgaagcaaaaa 101  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  8399991 gatgttaacctttgctgatggtgagttttgaagcaaaaa 8400029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 13489899 - 13489933
Alignment:
Q  90 ttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    ||||||||||||||| |||||||||||||||||||    
T  13489899 ttgaagcaaaaagtccaccattccatcaggtatgg 13489933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 7127083 - 7127014
Alignment:
Q  143 tcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaaccta 212  Q
    |||||||||||||||||| ||||||| | |  || |||||||| ||| ||||||| ||||| ||||||||    
T  7127083 tcagtgacttcaagttacgcaaggaatggagtttaaccttcaacaaaccaggaactaaggagagaaccta 7127014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 477047 - 476993
Alignment:
Q  145 agtgacttcaagttacacaa---ggaaggcaacttcaccttcaataaatcaggaa 196  Q
    ||||||||||||||||||||   |||||| | ||| |||||||||||||||||||    
T  477047 agtgacttcaagttacacaacaaggaagggagcttaaccttcaataaatcaggaa 476993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 446
Target Start/End: Original strand, 7058043 - 7058123
Alignment:
Q  366 taaagtacctcaagagtagttgaagaaactattagtgattcaatattagcaagctcaagcagccagtcgagtagaaccaaa 446  Q
    |||| ||||||||||||   |||||||| | | | |||||||| |||||||||||| | |||| |||||||||||| ||||    
T  7058043 taaattacctcaagagtgaatgaagaaattgtcaatgattcaacattagcaagctcgaccagcaagtcgagtagaagcaaa 7058123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 7103050 - 7103098
Alignment:
Q  76 gctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    ||||| ||||||||||||||||||||||| |  ||||| ||||||||||    
T  7103050 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatgg 7103098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 13460711 - 13460643
Alignment:
Q  145 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 213  Q
    |||||||||||||||| ||| ||||  | ||| ||| ||||||||| |||||| ||||| |||||||||    
T  13460711 agtgacttcaagttacgcaaagaagagagcttaaccctcaataaattaggaactaaggagagaacctaa 13460643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 7023176 - 7022962
Alignment:
Q  25 aaaatttgaatgtgcatctcaccttaaccagtctatacgatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    |||| |||||||  ||||| ||||  ||||||||||  |||||| ||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||    
T  7023176 aaaagttgaatgcacatctaacctcgaccagtctat--gatgtcgacctttgctgagggtgactttcgaagcaaaaagtcaactattccatcaggtatgg 7023079  T
Q  125 ttagg--taatt--tcttat--tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
     || |  | | |   | |||  | |||||||||||||||||||||||||||| | ||   || ||||||| | |||||| |||||||||||||||  |||    
T  7023078 ataagcatgagtcaacatatactctcagtgacttcaagttacacaaggaagggagctcagccatcaataagttaggaactaaggaaagaacctaagaaat 7022979  T
Q  219 caggaagaattaggatc 235  Q
    || || |||||||||||    
T  7022978 caagacgaattaggatc 7022962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 28092200 - 28092037
Alignment:
Q  64 atgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt--aggtaatttc----ttattttcagtgacttcaagt 157  Q
    |||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||| |  ||||  ||||    ||| |||||||||||||| ||    
T  28092200 atgtcaacctttgccgagggtgagttttgaatcaaaaagtccactattccatcaggtatggatgaaggttttttcctcattactttcagtgacttcaggt 28092101  T
Q  158 tacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcag 221  Q
    ||| ||| ||||  | ||  ||||||| |||||||| ||| ||| ||||||||||  |||||||    
T  28092100 tactcaaagaagagagctcaaccttcagtaaatcagaaactaagaaaagaacctaggcaatcag 28092037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 25216950 - 25216877
Alignment:
Q  145 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||||||||||||| |||||| ||| ||||  |||||||||||||  ||||| | ||| ||||||||||||||    
T  25216950 agtgacttcaagttatacaaggtagggaactcaaccttcaataaatttggaactagggagagaacctaatcaat 25216877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 25281105 - 25281032
Alignment:
Q  145 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||||||||||||| |||||| ||| ||||  |||||||||||||  ||||| | ||| ||||||||||||||    
T  25281105 agtgacttcaagttatacaaggtagggaactcaaccttcaataaatttggaactagggagagaacctaatcaat 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 25070260 - 25070180
Alignment:
Q  138 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    |||||| ||||||||||||||| |||||| ||| ||||  ||| |||| ||||| ||||| || || ||||||||||||||    
T  25070260 tattttaagtgacttcaagttatacaaggtagggaactcaaccgtcaacaaatccggaactaatgagagaacctaatcaat 25070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 25128235 - 25128155
Alignment:
Q  138 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    |||||| ||||||||||||||| |||||| ||| ||||  ||| |||| ||||| ||||| || || ||||||||||||||    
T  25128235 tattttaagtgacttcaagttatacaaggtagggaactcaaccgtcaacaaatccggaactaatgagagaacctaatcaat 25128155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 7975746 - 7975803
Alignment:
Q  66 gtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatg 123  Q
    |||||| ||||| || ||||| ||||||||||| ||||| || |||||||||||||||    
T  7975746 gtcaacttttgccgaaggtgaattttgaagcaagaagtccactattccatcaggtatg 7975803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 6369 - 6271
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 236  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  6369 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcgtcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 6271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 6447 - 6409
Alignment:
Q  66 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 104  Q
    |||||||||||| || |||||||||||||||||||||||    
T  6447 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 6409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 26291987 - 26291889
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 236  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  26291987 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 26291889  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 26305244 - 26305146
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 236  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  26305244 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 26305146  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 26338599 - 26338501
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 236  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  26338599 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 26338501  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 35336794 - 35336714
Alignment:
Q  138 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||| || |||||||||||||||||| ||||| | ||| |||| ||||||||||||||| ||||| ||||||||| ||||    
T  35336794 tatttccaatgacttcaagttacacaaagaagggagcttaacctccaataaatcaggaactaaggagagaacctaagcaat 35336714  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 27700906 - 27700983
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    |||||| |||||||||||||| |||||||  ||||  |||||||||||||||||||| | ||| ||||||||| ||||    
T  27700906 tttcagcgacttcaagttacataaggaagaaaactcaaccttcaataaatcaggaactacggagagaacctaagcaat 27700983  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 27700733 - 27700788
Alignment:
Q  67 tcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtat 122  Q
    ||||| |||||||| || |||||||||||||||||||| || || |||||||||||    
T  27700733 tcaacttttgctgaaggcgagttttgaagcaaaaagtcaactataccatcaggtat 27700788  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 26292065 - 26292027
Alignment:
Q  66 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 104  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26292065 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 26292027  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 26305322 - 26305284
Alignment:
Q  66 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 104  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26305322 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 26305284  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 26338677 - 26338639
Alignment:
Q  66 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 104  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26338677 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 26338639  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 33839361 - 33839426
Alignment:
Q  148 gacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 213  Q
    ||||||||||||||||| ||||| | ||| |||| ||||||||||||||| ||||| |||| ||||    
T  33839361 gacttcaagttacacaaagaaggaagcttaacctccaataaatcaggaactaaggagagaatctaa 33839426  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 33839157 - 33839205
Alignment:
Q  76 gctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 124  Q
    ||||| ||||||||||||||||| ||||| || ||||||||||||||||    
T  33839157 gctgacggtgagttttgaagcaagaagtccactattccatcaggtatgg 33839205  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 7174641 - 7174716
Alignment:
Q  366 taaagtacctcaagagtagttgaagaaactattagtgattcaatattagcaagctcaagcagccagtcgagtagaa 441  Q
    ||||||||||||||||||  |||| ||| | | | ||||||||||||||||||||||| || ||||| | ||||||    
T  7174641 taaagtacctcaagagtatgtgaacaaattgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaa 7174716  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28927456 - 28927529
Alignment:
Q  145 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||||||||| |||||||||||| | ||||  ||||| |||||||||||||  ||||  ||||||||||||||    
T  28927456 agtgacttcaatttacacaaggaatggaactcaaccttgaataaatcaggaattaaggtgagaacctaatcaat 28927529  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 42601950 - 42602037
Alignment:
Q  149 acttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 236  Q
    |||||||||||||||| ||||  | ||| |||| ||||||||||||||| ||||| |||| ||||  ||| |||  ||||||||||||    
T  42601950 acttcaagttacacaacgaagtgagcttaacctccaataaatcaggaactaaggagagaatctaagaaatgagggtgaattaggatca 42602037  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 14287949 - 14288026
Alignment:
Q  141 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    ||||||||||||||| |||| ||| ||||| ||||  | ||||||||||||||| |   |||| ||||||||||||||    
T  14287949 tttcagtgacttcaaattacgcaaagaagggaactcaatcttcaataaatcaggtattgaggagagaacctaatcaat 14288026  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 15280 - 15320
Alignment:
Q  178 accttcaataaatcaggaaccaaggaaagaacctaatcaat 218  Q
    |||||||||||||||||||| ||||| ||||||| ||||||    
T  15280 accttcaataaatcaggaactaaggagagaacctgatcaat 15320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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