View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_147 (Length: 218)

Name: NF3892_low_147
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_147
NF3892_low_147
[»] chr7 (21 HSPs)
chr7 (36-209)||(41741249-41741419)
chr7 (35-95)||(38139702-38139762)
chr7 (38-95)||(21702785-21702842)
chr7 (38-95)||(24753289-24753346)
chr7 (38-95)||(37182400-37182457)
chr7 (38-94)||(10072592-10072648)
chr7 (29-95)||(26004396-26004462)
chr7 (38-96)||(27850241-27850299)
chr7 (38-96)||(44734268-44734326)
chr7 (38-95)||(16866295-16866352)
chr7 (35-95)||(17851975-17852035)
chr7 (48-96)||(35074606-35074654)
chr7 (38-97)||(24425494-24425553)
chr7 (38-96)||(38153012-38153070)
chr7 (37-95)||(45708781-45708839)
chr7 (38-95)||(3226856-3226913)
chr7 (38-95)||(17885591-17885648)
chr7 (38-95)||(39317121-39317178)
chr7 (38-87)||(44658385-44658434)
chr7 (38-94)||(7780134-7780190)
chr7 (38-98)||(25905754-25905814)
[»] chr1 (19 HSPs)
chr1 (38-96)||(5181161-5181219)
chr1 (36-96)||(3627906-3627966)
chr1 (38-96)||(17135069-17135127)
chr1 (29-95)||(18353990-18354056)
chr1 (38-95)||(23968701-23968758)
chr1 (38-96)||(20774688-20774746)
chr1 (48-97)||(45866094-45866143)
chr1 (34-95)||(51421976-51422037)
chr1 (38-94)||(13390518-13390574)
chr1 (38-94)||(34059059-34059115)
chr1 (39-95)||(36187130-36187186)
chr1 (38-94)||(42439581-42439637)
chr1 (29-96)||(24236670-24236737)
chr1 (29-95)||(23490681-23490747)
chr1 (38-96)||(29936544-29936602)
chr1 (38-96)||(40087373-40087431)
chr1 (38-95)||(28298068-28298125)
chr1 (35-95)||(9982800-9982860)
chr1 (38-70)||(39616414-39616446)
[»] chr3 (16 HSPs)
chr3 (34-95)||(43582694-43582755)
chr3 (34-92)||(22535754-22535812)
chr3 (38-94)||(54317265-54317321)
chr3 (38-95)||(6738315-6738372)
chr3 (38-95)||(7469688-7469745)
chr3 (38-95)||(39655183-39655240)
chr3 (38-95)||(39728792-39728849)
chr3 (38-95)||(48390727-48390784)
chr3 (38-95)||(52572730-52572787)
chr3 (29-97)||(4015952-4016020)
chr3 (48-95)||(29858485-29858532)
chr3 (38-92)||(34026075-34026129)
chr3 (38-96)||(42758495-42758553)
chr3 (38-95)||(10823612-10823669)
chr3 (38-95)||(29284457-29284514)
chr3 (38-95)||(49580185-49580242)
[»] chr6 (10 HSPs)
chr6 (29-95)||(2367438-2367504)
chr6 (38-95)||(30986374-30986431)
chr6 (38-96)||(12141506-12141564)
chr6 (29-95)||(27738884-27738950)
chr6 (38-94)||(10187991-10188047)
chr6 (36-95)||(29341375-29341434)
chr6 (38-95)||(3483833-3483890)
chr6 (38-95)||(27534805-27534862)
chr6 (38-95)||(31496555-31496612)
chr6 (38-95)||(31501941-31501998)
[»] chr5 (14 HSPs)
chr5 (29-95)||(15890318-15890384)
chr5 (38-95)||(13401915-13401972)
chr5 (38-95)||(40517927-40517984)
chr5 (38-96)||(4920947-4921005)
chr5 (38-91)||(1218846-1218899)
chr5 (38-95)||(4583240-4583297)
chr5 (38-91)||(29245866-29245919)
chr5 (38-95)||(33727912-33727969)
chr5 (48-92)||(20973410-20973454)
chr5 (38-92)||(6810267-6810321)
chr5 (38-96)||(12447489-12447547)
chr5 (38-96)||(35311934-35311992)
chr5 (38-91)||(22694817-22694870)
chr5 (39-95)||(42987391-42987446)
[»] chr2 (10 HSPs)
chr2 (29-95)||(9632499-9632565)
chr2 (37-95)||(10920759-10920817)
chr2 (38-95)||(37999599-37999656)
chr2 (29-97)||(42797909-42797977)
chr2 (38-95)||(25213963-25214020)
chr2 (38-95)||(30847068-30847125)
chr2 (38-94)||(35409091-35409147)
chr2 (29-96)||(31942094-31942161)
chr2 (38-95)||(37106814-37106871)
chr2 (38-91)||(37472673-37472726)
[»] chr8 (4 HSPs)
chr8 (38-95)||(24928070-24928127)
chr8 (29-96)||(11254924-11254991)
chr8 (38-95)||(2075744-2075801)
chr8 (38-95)||(32303182-32303239)
[»] chr4 (17 HSPs)
chr4 (27-95)||(31752572-31752640)
chr4 (1-95)||(5902531-5902634)
chr4 (38-95)||(11028200-11028257)
chr4 (38-95)||(11122780-11122837)
chr4 (38-95)||(15987173-15987230)
chr4 (38-95)||(26564958-26565015)
chr4 (38-95)||(31918469-31918526)
chr4 (38-95)||(37349239-37349296)
chr4 (38-95)||(55826534-55826591)
chr4 (39-95)||(47550264-47550320)
chr4 (34-97)||(39047075-39047138)
chr4 (29-96)||(48459599-48459666)
chr4 (29-96)||(53906248-53906315)
chr4 (29-95)||(19882967-19883033)
chr4 (29-67)||(39375396-39375434)
chr4 (38-95)||(21423988-21424045)
chr4 (38-95)||(43893354-43893411)
[»] scaffold0519 (1 HSPs)
scaffold0519 (29-96)||(10402-10469)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 36 - 209
Target Start/End: Complemental strand, 41741419 - 41741249
Alignment:
Q  36 catcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctagacgccatacgcaattttcttttccnnnnnnnnnnnnnnn 135  Q
    ||||||||||  ||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||                   
T  41741419 catcaaattgggtttggttcgggcgggtaaccgcaaatatgggttttgttgccatgcctagacgccatacgcaattttcttttcc---gttttttttttt 41741323  T
Q  136 nnnaaggatcttttccatttttattatgaaatgagttgttttccttgtggtccaaattttcagcagccctatgc 209  Q
       ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41741322 ttgaaggatcttttccgtttttattatgaaatgagttgttttccatgtggtccaaattttcagcagccctatgc 41741249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 38139762 - 38139702
Alignment:
Q  35 ccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||||||  ||||||||||||||||||||||| |||||||| || ||||||||||||    
T  38139762 ccatcaaattgggtttggttcgggcgggtaaccgcggatatgggttttcttgccatgccta 38139702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 21702785 - 21702842
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| || |||||||| |||||||||||||||    
T  21702785 tcaaattgggtttggttcgggcgggtaaccacggatatgggttttgttgccatgccta 21702842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 24753289 - 24753346
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||||||||||||||| ||||||||| ||  ||||||| |||||||||||||||    
T  24753289 tcaaattgaatttggttcggacgggtaaccacgggtatgggttttgttgccatgccta 24753346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 37182400 - 37182457
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| |||| |||||||||||||||||| |||||||| ||||||||| |||||    
T  37182400 tcaaattgagtttgattcgggcgggtaaccgcggatatgggttttgttgccacgccta 37182457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 10072592 - 10072648
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    ||||||||  |||||||||||||||||||||||  ||||||| ||||||||||||||    
T  10072592 tcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgcct 10072648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 26004462 - 26004396
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| ||||||||||||  |||||||||||||||||||| ||  |||| || |||||||||||||||    
T  26004462 aaaaacccatcaaattgtgtttggttcgggcgggtaaccacgggtatgagttttgttgccatgccta 26004396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 27850299 - 27850241
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  |||||||||||||||||||| || ||||| || ||||||||||||||||    
T  27850299 tcaaattgggtttggttcgggcgggtaaccacggatatgagttttgttgccatgcctag 27850241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 44734326 - 44734268
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  |||||||||||||||||||||||  |||| || ||||||||||||||||    
T  44734326 tcaaattgggtttggttcgggcgggtaaccgcgagtatgagttttgttgccatgcctag 44734268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 16866295 - 16866352
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| || ||||| || |||||||||||||||    
T  16866295 tcaaattgggtttggttcgggcgggtaaccacggatatgagttttgttgccatgccta 16866352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 17851975 - 17852035
Alignment:
Q  35 ccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||||||  |||||||||||||||||||| |   ||||||| |||||||||||||||    
T  17851975 ccatcaaattgggtttggttcgggcgggtaaccacaagtatgggttttgttgccatgccta 17852035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 35074606 - 35074654
Alignment:
Q  48 tttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||||||||||||||||||| ||  ||||||| ||||||||||||||||    
T  35074606 tttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctag 35074654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 24425494 - 24425553
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctaga 97  Q
    ||||||||  |||||||||||| ||||||| ||| |||| || |||||||||||||||||    
T  24425494 tcaaattgggtttggttcgggctggtaaccacgtgtatgagttttgttgccatgcctaga 24425553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 38153012 - 38153070
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||| ||||||||||||||||||||| |  ||| | | ||||||||||||||||    
T  38153012 tcaaattgagtttggttcgggcgggtaaccgtgggtatagtttttgttgccatgcctag 38153070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 45708839 - 45708781
Alignment:
Q  37 atcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| ||||| ||||||||| ||| | |||||||| || |||||||||||||||    
T  45708839 atcaaattggatttgattcgggcggataatcacgtatatgagttttgttgccatgccta 45708781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 3226913 - 3226856
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||| ||||||||||| | ||||| | |||||||||||||||    
T  3226913 tcaaattgggtttggttcggacgggtaaccgcatgtatggattttgttgccatgccta 3226856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 17885591 - 17885648
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||| ||||||| ||  ||||||| |||||||||||||||    
T  17885591 tcaaattgggtttggttcgggcaggtaaccacgggtatgggttttgttgccatgccta 17885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 39317121 - 39317178
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| |||||||||||||| ||||||||  ||||  | |||||||||||||||    
T  39317121 tcaaattgagtttggttcgggcggataaccgcgagtatgaattttgttgccatgccta 39317178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 44658434 - 44658385
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgc 87  Q
    |||||||| ||||||||||||| ||||||||||  ||||||| |||||||    
T  44658434 tcaaattggatttggttcgggcaggtaaccgcgggtatgggttttgttgc 44658385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 7780134 - 7780190
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    ||||||||| ||||||||||  |||||||| ||  ||||||| ||||||||||||||    
T  7780134 tcaaattgagtttggttcggatgggtaaccacgggtatgggttttgttgccatgcct 7780190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 25905754 - 25905814
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctagac 98  Q
    ||||||||  ||| ||||| |||||||||| ||  ||||||| ||||||||||||||||||    
T  25905754 tcaaattgggtttagttcgagcgggtaaccacgggtatgggttttgttgccatgcctagac 25905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 5181161 - 5181219
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  5181161 tcaaattgaatttggttcgggcgggtaaccgcgggtatgggttttgttgccatgcctag 5181219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 3627966 - 3627906
Alignment:
Q  36 catcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||||| |||||||||||||||||||||||| |||| || |||||| |||||||||    
T  3627966 catcaaattgagtttggttcgggcgggtaaccgcgtgtatgagttttgttgtcatgcctag 3627906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 17135069 - 17135127
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  |||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  17135069 tcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgcctag 17135127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 18354056 - 18353990
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| ||| |||||||||||||||||||||||||||| ||||  || |||| |||||||||||||||    
T  18354056 aaaaacccgtcaaattgaatttggttcgggcgggtaatcgcgggtacgggttttgttgccatgccta 18353990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 23968701 - 23968758
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  23968701 tcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 23968758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 20774688 - 20774746
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| ||||||||||||||||    
T  20774688 tcaaattgggtttggttcgggcgggtaaccacgagtatgggttttgttgccatgcctag 20774746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 45866143 - 45866094
Alignment:
Q  48 tttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctaga 97  Q
    ||||| |||||||||||||||||  ||||||| |||||||||||||||||    
T  45866143 tttggctcgggcgggtaaccgcgagtatgggttttgttgccatgcctaga 45866094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 51421976 - 51422037
Alignment:
Q  34 cccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||||||  |||||||||||||||||||| || |||||| | || ||||||||||||    
T  51421976 cccatcaaattgggtttggttcgggcgggtaaccacggatatggattttattgccatgccta 51422037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 13390518 - 13390574
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    ||||||||  ||||||||||||||||||||| |  ||||||| ||||||||||||||    
T  13390518 tcaaattgggtttggttcgggcgggtaaccgtgggtatgggttttgttgccatgcct 13390574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 34059115 - 34059059
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    |||||||||||||||||||| ||| |||||| |  ||||||| ||||||||||||||    
T  34059115 tcaaattgaatttggttcggacggataaccgtgggtatgggttttgttgccatgcct 34059059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 36187186 - 36187130
Alignment:
Q  39 caaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| |||||||||||||||||||  ||  ||||||| |||||||||||||||    
T  36187186 caaattgagtttggttcgggcgggtaacgacgggtatgggttttgttgccatgccta 36187130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 42439637 - 42439581
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    ||||||||| |||||||||||||| ||||| || |||||| | ||||||||||||||    
T  42439637 tcaaattgagtttggttcgggcggataaccacgaatatggattttgttgccatgcct 42439581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 24236737 - 24236670
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||| ||| ||||||||| ||||||||||||||||||||  |  |||| || ||||||||||||||||    
T  24236737 aaaaacccgtcaaattgagtttggttcgggcgggtaaccatgggtatgagttttgttgccatgcctag 24236670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 23490747 - 23490681
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| ||| |||||||| ||||||||||||||||||||   |  ||||||| |||||||||||||||    
T  23490747 aaaaacccgtcaaattggatttggttcgggcgggtaactatgagtatgggttttgttgccatgccta 23490681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 29936544 - 29936602
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| |||||| |||||||||    
T  29936544 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtcatgcctag 29936602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 40087431 - 40087373
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||||||||||||||||| | ||| ||||||||  |||| || ||||||||||||||||    
T  40087431 tcaaattgaatttggttcagacggataaccgcgggtatgagttttgttgccatgcctag 40087373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 28298068 - 28298125
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| |||||||||||| |||||||| || ||||| || |||||| ||||||||    
T  28298068 tcaaattggatttggttcgggtgggtaaccacggatatgagttttgttgacatgccta 28298125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 9982860 - 9982800
Alignment:
Q  35 ccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||||| |||||||||||| | |||||| ||  |||| || |||||||||||||||    
T  9982860 ccatcaaattggatttggttcgggagagtaaccacgggtatgagttttgttgccatgccta 9982800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 39616414 - 39616446
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcg 70  Q
    ||||||||| |||||||||||||||||||||||    
T  39616414 tcaaattgagtttggttcgggcgggtaaccgcg 39616446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 43582694 - 43582755
Alignment:
Q  34 cccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||    
T  43582694 cccatcaaattggatttggttcgggcgggtaaccgcggatatgggttttgttgcaatgccta 43582755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 22535812 - 22535754
Alignment:
Q  34 cccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgc 92  Q
    ||||||||||||| |||||||||||||| ||||||||  ||||||| ||||||||||||    
T  22535812 cccatcaaattgagtttggttcgggcggataaccgcgggtatgggttttgttgccatgc 22535754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 54317265 - 54317321
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    |||||||| ||||||||||||||||||||| || |||||| | ||||||||||||||    
T  54317265 tcaaattggatttggttcgggcgggtaaccacggatatggattttgttgccatgcct 54317321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 6738372 - 6738315
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||||||  ||||||| || ||||||||||||    
T  6738372 tcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttattgccatgccta 6738315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 7469745 - 7469688
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  7469745 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 7469688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 39655240 - 39655183
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  39655240 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 39655183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 39728792 - 39728849
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| ||||||||||| ||||||||| ||  ||||||| |||||||||||||||    
T  39728792 tcaaattggatttggttcggacgggtaaccacgggtatgggttttgttgccatgccta 39728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 48390784 - 48390727
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| ||||||||||  ||||||||||||  ||||||| |||||||||||||||    
T  48390784 tcaaattggatttggttcgaacgggtaaccgcgggtatgggttttgttgccatgccta 48390727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 52572730 - 52572787
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| |||||||||||||| ||||| ||  ||||||| |||||||||||||||    
T  52572730 tcaaattgagtttggttcgggcggataaccacgggtatgggttttgttgccatgccta 52572787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 4016020 - 4015952
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctaga 97  Q
    |||| ||| ||||||||| ||| ||||||| |||||||| ||  ||||||| |||||||||||||||||    
T  4016020 aaaaacccgtcaaattgagtttcgttcgggtgggtaaccacgggtatgggttttgttgccatgcctaga 4015952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 29858532 - 29858485
Alignment:
Q  48 tttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  29858532 tttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 29858485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 34026075 - 34026129
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgc 92  Q
    ||||||||  ||||||||||| |||||||||||  ||||||| ||||||||||||    
T  34026075 tcaaattggttttggttcgggagggtaaccgcgggtatgggttttgttgccatgc 34026129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 42758495 - 42758553
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  ||||| |||||||||||||| ||  ||||||| ||||||||||||||||    
T  42758495 tcaaattgggtttggatcgggcgggtaaccacgggtatgggttttgttgccatgcctag 42758553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 10823669 - 10823612
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||||||||||| |||||||||||  ||  |||| || |||||||||||||||    
T  10823669 tcaaattgaatttggtttgggcgggtaacgacgggtatgagttttgttgccatgccta 10823612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 29284457 - 29284514
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| ||  |||| || |||||||||||||||    
T  29284457 tcaaattgggtttggttcgggcgggtaaccacgggtatgagttttgttgccatgccta 29284514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 49580185 - 49580242
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| ||||||||||||||| ||||| ||  ||||||| |||||| ||||||||    
T  49580185 tcaaattggatttggttcgggcggataaccacgggtatgggttttgttgtcatgccta 49580242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 2367438 - 2367504
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| ||||||||||||  |||||||||| ||||||||| || |||||||| |||||||||||||||    
T  2367438 aaaaacccatcaaattgggtttggttcggacgggtaaccacggatatgggttttgttgccatgccta 2367504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 30986374 - 30986431
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  30986374 tcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 30986431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 12141506 - 12141564
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||||||||||||||||||||||||     ||||||| ||||||||||||||||    
T  12141506 tcaaattgaatttggttcgggcgggtaaccataggtatgggttttgttgccatgcctag 12141564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 27738884 - 27738950
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| |||||||||||||||||||||||||| ||||||||||  ||||||  |||||| ||| ||||    
T  27738884 aaaaacccatcaaattgaatttggttcgggcaggtaaccgcgagtatggggtttgttgacatcccta 27738950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 10188047 - 10187991
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  10188047 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcct 10187991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 29341375 - 29341434
Alignment:
Q  36 catcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||||| |||| |||| ||| ||| ||||| |||||||| |||||||||||||||    
T  29341375 catcaaattgagtttgattcgagcgagtacccgcggatatgggttttgttgccatgccta 29341434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 3483890 - 3483833
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  ||||||||||||||||||||  |  ||||||| |||||||||||||||    
T  3483890 tcaaattgggtttggttcgggcgggtaaccatgagtatgggttttgttgccatgccta 3483833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 27534805 - 27534862
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| |||||||||| ||| ||||| ||  ||||||| |||||||||||||||    
T  27534805 tcaaattgagtttggttcggacggttaaccacgggtatgggttttgttgccatgccta 27534862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 31496555 - 31496612
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| ||||||| || ||||||||| ||  ||||||| |||||||||||||||    
T  31496555 tcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31496612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 31501941 - 31501998
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| ||||||| || ||||||||| ||  ||||||| |||||||||||||||    
T  31501941 tcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31501998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 15890318 - 15890384
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| ||| |||||||| ||||||||||||||||||||||||  ||||||| |||||| ||||||||    
T  15890318 aaaaacccgtcaaattggatttggttcgggcgggtaaccgcgagtatgggttttgttgtcatgccta 15890384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 13401972 - 13401915
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  13401972 tcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 13401915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 40517927 - 40517984
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||||||||||||| ||||||||||| ||  ||||||| |||||||||||||||    
T  40517927 tcaaattgaatttggttcaggcgggtaaccacgggtatgggttttgttgccatgccta 40517984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 4920947 - 4921005
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| ||||||||||||||||    
T  4920947 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctag 4921005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 1218846 - 1218899
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatg 91  Q
    |||||||| |||||||||| |||||||||||||  ||||||| |||||||||||    
T  1218846 tcaaattggatttggttcgagcgggtaaccgcgggtatgggttttgttgccatg 1218899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 4583240 - 4583297
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  ||||||||||||||||||||| | ||||| || |||||||||||||||    
T  4583240 tcaaattgggtttggttcgggcgggtaaccgtggatatgagttttgttgccatgccta 4583297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 29245919 - 29245866
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatg 91  Q
    ||||||||| |||||||||||||||||||||||  ||||||| |||||| ||||    
T  29245919 tcaaattgagtttggttcgggcgggtaaccgcgggtatgggttttgttgtcatg 29245866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 33727969 - 33727912
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  33727969 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 33727912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 20973454 - 20973410
Alignment:
Q  48 tttggttcgggcgggtaaccgcgtatatgggtattgttgccatgc 92  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||    
T  20973454 tttggttcgggcgggtaaccgcgggtatgggttttgttgccatgc 20973410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 6810267 - 6810321
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgc 92  Q
    ||||||||| |||||||||| |||||| || || |||||||| ||||||||||||    
T  6810267 tcaaattgagtttggttcggacgggtatccacggatatgggttttgttgccatgc 6810321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 12447489 - 12447547
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  ||||||||||| |||||||| ||  ||||||| ||||||||||||||||    
T  12447489 tcaaattgggtttggttcgggtgggtaaccacgggtatgggttttgttgccatgcctag 12447547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 35311934 - 35311992
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    ||||||||  ||||||||||||||||||||||| ||||| || || ||| |||||||||    
T  35311934 tcaaattgggtttggttcgggcgggtaaccgcggatatgagttttattgtcatgcctag 35311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 22694870 - 22694817
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatg 91  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| |||||||||||    
T  22694870 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatg 22694817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 42987446 - 42987391
Alignment:
Q  39 caaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||||||||||||| ||| || || || |||||||| |||||||||||||||    
T  42987446 caaattgaatttggttcggacggata-ccacgaatatgggttttgttgccatgccta 42987391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 9632499 - 9632565
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| ||| ||||||||| |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  9632499 aaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 9632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 10920759 - 10920817
Alignment:
Q  37 atcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| ||||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  10920759 atcaaattggatttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 10920817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 37999599 - 37999656
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||||||||||||||||||  ||||| || |||||||| |||||||||||||||    
T  37999599 tcaaattgaatttggttcgggcgactaaccacggatatgggttttgttgccatgccta 37999656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 42797977 - 42797909
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctaga 97  Q
    |||| ||| |||||||  ||||||||||||||||||||| ||  ||||||| |||||||||||||||||    
T  42797977 aaaaacccgtcaaattagatttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaga 42797909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 25213963 - 25214020
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| |||||||||||| ||||| ||| | |||||||| |||||||||||||||    
T  25213963 tcaaattggatttggttcgggtgggtacccgtggatatgggttttgttgccatgccta 25214020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 30847068 - 30847125
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  30847068 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 30847125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 35409147 - 35409091
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcct 94  Q
    |||||||  |||||||||||||||||| ||| || ||||||| ||||||||||||||    
T  35409147 tcaaatttgatttggttcgggcgggtacccgtgtgtatgggttttgttgccatgcct 35409091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 31942161 - 31942094
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||| ||||||||||||| ||||||| |||||||||||| ||  ||||||| |||||| ||| |||||    
T  31942161 aaaaacccatcaaattgagtttggtttgggcgggtaaccacgggtatgggttttgttgtcatacctag 31942094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 37106814 - 37106871
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||||||  |||| || |||||| ||||||||    
T  37106814 tcaaattgggtttggttcgggcgggtaaccgcgagtatgagttttgttgtcatgccta 37106871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 37472726 - 37472673
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatg 91  Q
    ||||||||| ||||||||||||||||||| |||  ||||||| ||||| |||||    
T  37472726 tcaaattgagtttggttcgggcgggtaactgcgggtatgggttttgttaccatg 37472673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 24928070 - 24928127
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  24928070 tcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 24928127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 11254991 - 11254924
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||| ||| |||||||| ||||||||||| | ||||||||| | ||||||| |||||| |||||||||    
T  11254991 aaaaacccgtcaaattggatttggttcggacaggtaaccgcatgtatgggttttgttgtcatgcctag 11254924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 2075801 - 2075744
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||| ||||||||||| || ||||| || |||||||||||||||    
T  2075801 tcaaattgggtttggttcaggcgggtaaccacggatatgagttttgttgccatgccta 2075744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 32303182 - 32303239
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||| ||||||||||||||| ||  ||||||| |||||||||||||||    
T  32303182 tcaaattgggtttgtttcgggcgggtaaccacgggtatgggttttgttgccatgccta 32303239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 31752572 - 31752640
Alignment:
Q  27 gtaaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||| ||| |||||||| ||||| ||||||||||||||||||  ||||||| |||||| ||||||||    
T  31752572 gtaaaaacccgtcaaattggatttgattcgggcgggtaaccgcgggtatgggttttgttgtcatgccta 31752640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5902634 - 5902531
Alignment:
Q  1 tcggggaaaacccatacccaaacccagtaaaagc---------ccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatg 91  Q
    |||||||||||||||||||||||||||| ||| |         || ||||||||| |||||||||||||||||||| ||  ||| ||| |||||||||||    
T  5902634 tcggggaaaacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtataggttttgttgccatg 5902535  T
Q  92 ccta 95  Q
    ||||    
T  5902534 ccta 5902531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 11028200 - 11028257
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  ||||||||||| |||||||| ||| ||||||| |||||||||||||||    
T  11028200 tcaaattgggtttggttcgggtgggtaaccacgtgtatgggttttgttgccatgccta 11028257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 11122837 - 11122780
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||| |||||||||||||||||||| ||  |||| || |||||||||||||||    
T  11122837 tcaaattgagtttggttcgggcgggtaaccacgggtatgagttttgttgccatgccta 11122780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 15987230 - 15987173
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  ||||||||||| ||||||||||| || ||||| |||||||||||||||    
T  15987230 tcaaattgggtttggttcgggtgggtaaccgcgaatgtgggttttgttgccatgccta 15987173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 26564958 - 26565015
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| |||||||||||| |||||||| ||  ||||||| |||||||||||||||    
T  26564958 tcaaattggatttggttcgggtgggtaaccacgggtatgggttttgttgccatgccta 26565015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 31918526 - 31918469
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||| ||||||| || |||||||| |||||||||||||||    
T  31918526 tcaaattgggtttggttcgggcaggtaaccacggatatgggttttgttgccatgccta 31918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 37349239 - 37349296
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  |||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  37349239 tcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 37349296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 55826591 - 55826534
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| ||||||||||| ||||||||| ||  ||||||| |||||||||||||||    
T  55826591 tcaaattggatttggttcggacgggtaaccacgggtatgggttttgttgccatgccta 55826534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 47550320 - 47550264
Alignment:
Q  39 caaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| |||||||||||||||||||| | | ||||||| ||||| |||||||||    
T  47550320 caaattgagtttggttcgggcgggtaaccacatgtatgggttttgtttccatgccta 47550264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 39047075 - 39047138
Alignment:
Q  34 cccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctaga 97  Q
    ||||||||||||  |||| ||||| |||||||||| | |||| ||| |||||||||||||||||    
T  39047075 cccatcaaattgggtttgattcggacgggtaaccgtggatataggttttgttgccatgcctaga 39047138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 48459599 - 48459666
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||| |||||||||||   |||| ||||| |||||||||||| |||||| | ||||||||||||||||    
T  48459599 aaaaacccatcaaatttggtttgattcggacgggtaaccgcggatatggattttgttgccatgcctag 48459666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 53906315 - 53906248
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||| ||| ||||||||  |||||||||||||| |||||| |  ||||||| ||||||||||||||||    
T  53906315 aaaaacccgtcaaattgggtttggttcgggcggataaccgtgggtatgggttttgttgccatgcctag 53906248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 19883033 - 19882967
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||| ||| ||||||||  |||||||||||||||||  ||||  ||||||| |||||||||||||||    
T  19883033 aaaaacccgtcaaattgggtttggttcgggcgggtattcgcgagtatgggttttgttgccatgccta 19882967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 39375396 - 39375434
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaacc 67  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  39375396 aaaaacccgtcaaattgaatttggttcgggcgggtaacc 39375434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 21423988 - 21424045
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    |||||||| ||||||||||||||||||||| ||  |||| || || ||||||||||||    
T  21423988 tcaaattggatttggttcgggcgggtaaccacgggtatgagttttattgccatgccta 21424045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 43893354 - 43893411
Alignment:
Q  38 tcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgccta 95  Q
    ||||||||  ||||| |||||||||||||| ||  ||||||| |||||||||||||||    
T  43893354 tcaaattgggtttggctcgggcgggtaaccacgggtatgggttttgttgccatgccta 43893411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 10402 - 10469
Alignment:
Q  29 aaaagcccatcaaattgaatttggttcgggcgggtaaccgcgtatatgggtattgttgccatgcctag 96  Q
    |||| ||| |||||||| ||||||||||| | ||||||||| | ||||||| |||||| |||||||||    
T  10402 aaaaacccgtcaaattggatttggttcggacaggtaaccgcatgtatgggttttgttgtcatgcctag 10469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University