View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_149 (Length: 214)

Name: NF3892_low_149
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_149
NF3892_low_149
[»] chr3 (17 HSPs)
chr3 (19-214)||(22368095-22368290)
chr3 (19-214)||(22468116-22468326)
chr3 (15-214)||(22630607-22630821)
chr3 (22-214)||(22358170-22358377)
chr3 (22-214)||(22635671-22635878)
chr3 (127-214)||(22442907-22442994)
chr3 (134-214)||(22353979-22354059)
chr3 (20-111)||(22431438-22431529)
chr3 (19-122)||(22436909-22437012)
chr3 (15-128)||(22458758-22458871)
chr3 (15-128)||(22481739-22481852)
chr3 (25-122)||(22354086-22354185)
chr3 (159-214)||(22431341-22431396)
chr3 (29-88)||(22443048-22443107)
chr3 (148-206)||(22458665-22458723)
chr3 (148-206)||(22481646-22481704)
chr3 (19-56)||(22632206-22632243)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 22368290 - 22368095
Alignment:
Q  19 gccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaagg 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22368290 gccaagaaagtttttgacaaccaaaaggtcgttaaacactttgattgtcgtttatggatcacggtttctcgaccatataataaagaaaaattgctgaagg 22368191  T
Q  119 acatactgcaacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaa 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22368190 acatactgcaacaagggaaatgtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaa 22368095  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 22468326 - 22468116
Alignment:
Q  19 gccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaagg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||    
T  22468326 gccaagaaagtttttgacaaccaaaaggtcgttaaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgaggg 22468227  T
Q  119 acatactg---------------caacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactactt 203  Q
    | ||  ||               ||||||||| ||| ||||||||| ||||| ||||| |||||| |||||  |||||||||||||||||||||||||||    
T  22468226 aaattttgctcgatatttacaaacaacaaggggaagatcctcctcagagtctccatcagatggatcgaaagccattagttgatgaagtgagaaactactt 22468127  T
Q  204 gcaaggaaaaa 214  Q
    |||||||||||    
T  22468126 gcaaggaaaaa 22468116  T

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Target: chr3; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 22630821 - 22630607
Alignment:
Q  15 tcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctg 114  Q
    ||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| ||||| |||| ||    
T  22630821 tcttgccaagaaaatttttgacaaccgaaaggtcgttaaacactttgattgtcatgaatggatcacggtgtctcgaccatacaatatagaaacattgttg 22630722  T
Q  115 aaggacatactgc---------------aacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaact 199  Q
    | ||||||  |||               |||||||||||| ||||||||||||||| |||||||||||| |||||  |||||||||||||||||||||||    
T  22630721 agggacattttgctcgagatttacaaacaacaagggaaagatcctcctcaaagtctccatcaaatggatcgaaagccattagttgatgaagtgagaaact 22630622  T
Q  200 acttgcaaggaaaaa 214  Q
    |||||||||||||||    
T  22630621 acttgcaaggaaaaa 22630607  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 22358377 - 22358170
Alignment:
Q  22 aagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggaca 121  Q
    ||||||||||||||||||| ||||||||| ||||| |||||  ||| ||||||||| ||||||||||||||||| |||| ||||||| || ||| |||||    
T  22358377 aagaaagtttttgacaacccaaaggtcgtaaaacactttgatcgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaagtgttgagggaca 22358278  T
Q  122 tactg---------------caacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgca 206  Q
    |  ||               |||||| |||||| ||||||||| ||||| | |||||||||| || ||| ||||||||||||||||||||||||||||||    
T  22358277 ttatgctcgagttttacaaacaacaaaggaaagttcctcctcagagtctccgtcaaatggatcgacagtcattagttgatgaagtgagaaactacttgca 22358178  T
Q  207 aggaaaaa 214  Q
    || |||||    
T  22358177 agaaaaaa 22358170  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 22635878 - 22635671
Alignment:
Q  22 aagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggaca 121  Q
    ||||||||||||||||||| ||||||||| ||| | ||||| |||| ||||||||| ||||||||||||||||| |||| ||||||| || ||   ||||    
T  22635878 aagaaagtttttgacaacccaaaggtcgtaaaatactttgattgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaagtgttgcgagaca 22635779  T
Q  122 tactgc---------------aacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgca 206  Q
    |  |||               |||||||| ||| ||||||| | ||||| |||||||||||| |||||| |||||||||||||||||||||| |||| ||    
T  22635778 ttatgctcgagttttacaaacaacaaggggaagttcctcctgagagtctccatcaaatggatcgaaagtcattagttgatgaagtgagaaaccactttca 22635679  T
Q  207 aggaaaaa 214  Q
    ||||||||    
T  22635678 aggaaaaa 22635671  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 22442994 - 22442907
Alignment:
Q  127 caacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaa 214  Q
    |||||| |||||| ||||||||| ||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||    
T  22442994 caacaaaggaaagttcctcctcagagtctccatcaaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaa 22442907  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 22354059 - 22353979
Alignment:
Q  134 ggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaa 214  Q
    |||||| ||||||||| ||||| |||||||||||| |||||  |||||||||||||||||||||| |||||||||||||||    
T  22354059 ggaaagatcctcctcagagtctccatcaaatggatcgaaagccattagttgatgaagtgagaaacaacttgcaaggaaaaa 22353979  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 22431529 - 22431438
Alignment:
Q  20 ccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattg 111  Q
    |||||||||||||||||||| | | |||| ||||||| ||||| |||| | |||||||||| ||||||| ||||||| ||| ||||||||||    
T  22431529 ccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacagtgtctcaaccatatgatatagaaaaattg 22431438  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 22437012 - 22436909
Alignment:
Q  19 gccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaagg 118  Q
    ||||||||||||||||| |||   || ||| | ||||| ||||||||||||||||||||||| ||||||| | |||| | ||||||||||||| ||| ||    
T  22437012 gccaagaaagtttttgagaacatcaaagtcttaaaacaatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaagaaaaattgttgaggg 22436913  T
Q  119 acat 122  Q
    ||||    
T  22436912 acat 22436909  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 22458871 - 22458758
Alignment:
Q  15 tcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctg 114  Q
    |||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||||||||||||  ||||||| | |||| |||| ||||   ||||||    
T  22458871 tcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctg 22458772  T
Q  115 aaggacatactgca 128  Q
    | |||||| |||||    
T  22458771 agggacatgctgca 22458758  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 22481852 - 22481739
Alignment:
Q  15 tcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctg 114  Q
    |||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||||||||||||  ||||||| | |||| |||| ||||   ||||||    
T  22481852 tcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctg 22481753  T
Q  115 aaggacatactgca 128  Q
    | |||||| |||||    
T  22481752 agggacatgctgca 22481739  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 22354185 - 22354086
Alignment:
Q  25 aaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatg--tatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacat 122  Q
    ||||||||||||||||||||||| |||||  | ||||| ||| |||  ||||||||||||| ||||||||||| || | ||||||| || ||| ||||||    
T  22354185 aaagtttttgacaaccaaaaggtagttaagaactttgattgttatgtatatggatcacggtatctcgaccatacaacatagaaaaagtgttgagggacat 22354086  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 22431396 - 22431341
Alignment:
Q  159 tcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaa 214  Q
    |||||||||| |||| |||||| ||||| || ||||||||||||||||||||||||    
T  22431396 tcaaatggatcgaaacttattacttgataaactgagaaactacttgcaaggaaaaa 22431341  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 22443107 - 22443048
Alignment:
Q  29 tttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctc 88  Q
    ||||||||||||||||||| ||||| || |||||||||| | ||||||||| ||||||||    
T  22443107 tttttgacaaccaaaaggtagttaagcactttgactgtcttttatggatcatggtgtctc 22443048  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 22458723 - 22458665
Alignment:
Q  148 caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgca 206  Q
    |||||| ||||||||||| || || ||| ||| |||||||||||||| |||||||||||    
T  22458723 caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgca 22458665  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 22481704 - 22481646
Alignment:
Q  148 caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgca 206  Q
    |||||| ||||||||||| || || ||| ||| |||||||||||||| |||||||||||    
T  22481704 caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgca 22481646  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 22632243 - 22632206
Alignment:
Q  19 gccaagaaagtttttgacaaccaaaaggtcgttaaaca 56  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  22632243 gccaagaaagtttttgacaaccgaaagatcgttaaaca 22632206  T

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