View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_151 (Length: 206)

Name: NF3892_low_151
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_151
NF3892_low_151
[»] chr8 (7 HSPs)
chr8 (20-189)||(33005012-33005181)
chr8 (20-180)||(3770100-3770260)
chr8 (20-180)||(3701168-3701328)
chr8 (20-169)||(3719455-3719604)
chr8 (20-180)||(3707935-3708095)
chr8 (44-187)||(3777791-3777934)
chr8 (114-187)||(1969116-1969189)
[»] chr7 (4 HSPs)
chr7 (122-165)||(41562615-41562658)
chr7 (120-165)||(41511442-41511487)
chr7 (125-163)||(48398546-48398584)
chr7 (120-165)||(48532784-48532829)
[»] chr5 (4 HSPs)
chr5 (111-144)||(39476555-39476588)
chr5 (111-142)||(39487510-39487541)
chr5 (123-169)||(11292348-11292394)
chr5 (111-144)||(39484306-39484339)
[»] chr6 (2 HSPs)
chr6 (120-164)||(845016-845060)
chr6 (120-164)||(870300-870344)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 33005012 - 33005181
Alignment:
Q  20 caaacccaccttgagtccctctattaacaaaatagcatttaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcg 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33005012 caaacccaccttgagtccctctattaacaaaatagcattcaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcg 33005111  T
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtg 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33005112 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtg 33005181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 3770100 - 3770260
Alignment:
Q  20 caaacccaccttgagtccctctattaacaaaatagcatttaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcg 119  Q
    ||||||||| || |||||||||| ||  ||||||||||| | |||||| || |||||||| |||||||||| |||||||||||||||| |||| |||||     
T  3770100 caaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttaccattggcactcccgacacaatactctca 3770199  T
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggattt 180  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  3770200 agtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt 3770260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 3701328 - 3701168
Alignment:
Q  20 caaacccaccttgagtccctctattaacaaaatagcatttaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcg 119  Q
    ||||||||| |||||||||||| | ||||||| |||||| | ||||||||||||||| || ||||| |||||||||||||||||  || | || |||||     
T  3701328 caaacccactttgagtccctctgtcaacaaaacagcattcattctttgctcgccaaataatggccatgttatcattggcactcctaacacgatactctca 3701229  T
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggattt 180  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||    
T  3701228 agtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaagtgtgactaaggattt 3701168  T

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Target: chr8; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 3719604 - 3719455
Alignment:
Q  20 caaacccaccttgagtccctctattaacaaaatagcatttaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcg 119  Q
    ||||||||| || |||||||||| ||  ||||||||||| | |||||| || |||||||| ||||||||||||||||||||||| ||| |||| |||||     
T  3719604 caaacccactttaagtccctctactattaaaatagcattcattctttgatcaccaaacaatggccaagttatcattggcactccggacacaatactctca 3719505  T
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtg 169  Q
    || || |||||||||||||||||||||||||||||||| |||||||||||    
T  3719504 agcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaagtgtg 3719455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 3708095 - 3707935
Alignment:
Q  20 caaacccaccttgagtccctctattaacaaaatagcatttaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcg 119  Q
    ||||||||| || |||||||||| ||  ||||||||||| | | |||| || |||||||| ||||||||||||||||||||||| ||| |||| |||||     
T  3708095 caaacccactttaagtccctctactattaaaatagcattcattatttgatcaccaaacaatggccaagttatcattggcactccggacacaatactctca 3707996  T
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggattt 180  Q
    || || |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  3707995 agcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt 3707935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 3777791 - 3777934
Alignment:
Q  44 taacaaaatagcatttaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgt 143  Q
    |||||| |||||||| | |||||||||   |||||| |||||||||||||||||||||||  || |||  ||||| ||||| ||||||||||||||||||    
T  3777791 taacaacatagcattcattctttgctctgaaaacaatggccaagttatcattggcactccgaacacaagactctccagtgtcgaattccaaccacaatgt 3777890  T
Q  144 gttaaaaatccaccagttgaagtgtggcttaggatttgagtctg 187  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  3777891 gttaaaaatccaccggttgaaatgtggcttaggatttgagtctg 3777934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 1969189 - 1969116
Alignment:
Q  114 ctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctg 187  Q
    ||||| || ||||||||||| |||||||| || || ||||||||| ||||  |||| |||||||||||| ||||    
T  1969189 ctctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctg 1969116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 41562658 - 41562615
Alignment:
Q  122 tgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 165  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  41562658 tgttgaattccaaccacaatgagataaaaatccaccagttgaag 41562615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 41511487 - 41511442
Alignment:
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 165  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  41511487 agtgttgaattccaaccacaatgagtcaaaaatccaccaattgaag 41511442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 48398584 - 48398546
Alignment:
Q  125 tgaattccaaccacaatgtgttaaaaatccaccagttga 163  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  48398584 tgaattccaaccacaatgagttaaaaacccaccagttga 48398546  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 48532829 - 48532784
Alignment:
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 165  Q
    |||||||||||||| |||||||||||||| ||||| ||| ||||||    
T  48532829 agtgttgaattccatccacaatgtgttaagaatcctccaattgaag 48532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 39476588 - 39476555
Alignment:
Q  111 atgctctcgagtgttgaattccaaccacaatgtg 144  Q
    ||||||||||||||||||||||||||||||||||    
T  39476588 atgctctcgagtgttgaattccaaccacaatgtg 39476555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 39487541 - 39487510
Alignment:
Q  111 atgctctcgagtgttgaattccaaccacaatg 142  Q
    ||||||||||||||||||||||||||||||||    
T  39487541 atgctctcgagtgttgaattccaaccacaatg 39487510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 11292348 - 11292394
Alignment:
Q  123 gttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtg 169  Q
    |||||||||||||||||||||| ||| |||||||| ||||| |||||    
T  11292348 gttgaattccaaccacaatgtgataagaatccacctgttgatgtgtg 11292394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 39484339 - 39484306
Alignment:
Q  111 atgctctcgagtgttgaattccaaccacaatgtg 144  Q
    ||||||||||||||||||||||||||| ||||||    
T  39484339 atgctctcgagtgttgaattccaaccataatgtg 39484306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 845016 - 845060
Alignment:
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaa 164  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    
T  845016 agtgttgaattccaaccacaatgagttaaaaacccaccaattgaa 845060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 870300 - 870344
Alignment:
Q  120 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaa 164  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    
T  870300 agtgttgaattccaaccacaatgagttaaaaacccaccaattgaa 870344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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