View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_16 (Length: 508)

Name: NF3892_low_16
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_16
NF3892_low_16
[»] chr1 (5 HSPs)
chr1 (6-348)||(5354874-5355216)
chr1 (381-495)||(5355238-5355352)
chr1 (381-435)||(14244650-14244704)
chr1 (381-417)||(16136696-16136732)
chr1 (381-417)||(26209887-26209923)
[»] chr3 (2 HSPs)
chr3 (390-479)||(3267092-3267181)
chr3 (383-441)||(46696645-46696703)
[»] chr2 (3 HSPs)
chr2 (388-479)||(41231293-41231384)
chr2 (383-460)||(40832783-40832858)
chr2 (381-417)||(29483297-29483333)
[»] chr4 (2 HSPs)
chr4 (381-438)||(26335571-26335628)
chr4 (378-438)||(45497625-45497685)
[»] chr7 (5 HSPs)
chr7 (381-461)||(41970653-41970732)
chr7 (381-442)||(26921745-26921806)
chr7 (381-417)||(22616321-22616357)
chr7 (381-417)||(38364174-38364210)
chr7 (381-417)||(38672432-38672468)
[»] chr8 (1 HSPs)
chr8 (378-417)||(15889451-15889490)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 5354874 - 5355216
Alignment:
Q  6 gatattcgttaaggaatnnnnnnnntgaagttgtgttgaaaatatattttttagaacggatggataacaaactcgaaacttcaatccttaaaaccatcta 105  Q
    |||||||||||||||||        |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  5354874 gatattcgttaaggaataaaaaaaatgaagttgtgttgaaaatattttttttagaatggatggataacaaactcgaaacttcaatccttaaaagcatcta 5354973  T
Q  106 ccgtttggtatcgaactaaataatttcaatttggttagtccaagggtcaagcaacttaagttagggttttagaccnnnnnnntccctaaaaatttaattc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  5354974 ccgtttggtatcgaactaaataatttcaatttggttagtccaagggtcaagcaacttaagttagggttttagaccaaaaaaatccctaaaaatttaattc 5355073  T
Q  206 aataatagatatataatgtaatagattaatcatggatgtttatccaactcaattcttcaacttgagggtttaaatcgttattaaccaggttcgattctag 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  5355074 aataatagatatataatgtaatagattaatcatggatgtttatccaactcaattcttcaacttgagggcttaaatcgttcttcaccaggttcgattctag 5355173  T
Q  306 gaattagtaaaacgtaatttttatttaattaattttacaagta 348  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  5355174 gaattagccaaacgtaatttttatttaattaattttacaagta 5355216  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 381 - 495
Target Start/End: Original strand, 5355238 - 5355352
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaataggggatagttttgtaaaatcccaacaatccatcttcttctct 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  5355238 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaacagggggtagttttgtaaaatcccaacaatccatcttcttctct 5355337  T
Q  481 catcttctctgccct 495  Q
    |||||||||||||||    
T  5355338 catcttctctgccct 5355352  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 14244650 - 14244704
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaa 435  Q
    |||||||| |||||||||||||||||||||| ||||| | ||||| | |||||||    
T  14244650 aaaatattggacacaaatacaacaccatggacagtttggacatttcatccataaa 14244704  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 16136732 - 16136696
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagttt 417  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  16136732 aaaatatttgacacaaatacgacaccatgggtagttt 16136696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 26209923 - 26209887
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagttt 417  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  26209923 aaaatatttgacacaaatacgacaccatgggtagttt 26209887  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 479
Target Start/End: Original strand, 3267092 - 3267181
Alignment:
Q  390 gacacaaatacaacaccatggatagtttagccattttaaccataaaataggggatagttttgtaaaatcccaac-aatccatcttcttctc 479  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| ||||||  | |||||| ||||| |||| || |||||||||||||    
T  3267092 gacacaaatacaacaccatggatagtttagacatttcaaccataaattagggg-caattttgtcaaatcacaacaaacccatcttcttctc 3267181  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 46696645 - 46696703
Alignment:
Q  383 aatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaataggg 441  Q
    |||||||||||||||||| ||| |||| ||||||| | ||||| | |||||||||||||    
T  46696645 aatatttgacacaaatactacaacatgaatagttttgacatttcatccataaaataggg 46696703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 41231384 - 41231293
Alignment:
Q  388 ttgacacaaatacaacaccatggatagtttagccattttaaccataaaataggggatagttttgtaaaatcccaaca-atccatcttcttctc 479  Q
    ||||||||||||||||||||||||  |||| | ||||| ||||||||| | ||||  ||||||||||||||||| ||  ||||||||||||||    
T  41231384 ttgacacaaatacaacaccatggactgttttgacatttcaaccataaagt-gggggcagttttgtaaaatcccatcacctccatcttcttctc 41231293  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 40832783 - 40832858
Alignment:
Q  383 aatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaataggggatagttttgtaaaatccc 460  Q
    |||||| ||||||||||||| ||||||| |||||| | ||||| | |||||||||||||   ||||||||||||||||    
T  40832783 aatattggacacaaatacaataccatgggtagttttgacatttcatccataaaataggg--cagttttgtaaaatccc 40832858  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 29483297 - 29483333
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagttt 417  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  29483297 aaaatatttgacacaaatacgacaccatgggtagttt 29483333  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 26335628 - 26335571
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaata 438  Q
    ||||||||| ||||||| ||||||||||||| ||||| | ||||| ||||||||||||    
T  26335628 aaaatatttaacacaaaaacaacaccatggacagttttgtcatttcaaccataaaata 26335571  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 45497625 - 45497685
Alignment:
Q  378 cataaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaata 438  Q
    |||||||||||||||||||| |||||| |||||| | ||| | ||||| ||||||||||||    
T  45497625 cataaaatatttgacacaaaaacaacatcatggacaattttgacatttcaaccataaaata 45497685  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 461
Target Start/End: Complemental strand, 41970732 - 41970653
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaataggggatagttttgtaaaatccca 461  Q
    |||||||||||||||||||| ||||||||| |||||| |  ||||  ||||| || |||||| ||||||||| ||||||||    
T  41970732 aaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagtagggg-tagttttgtcaaatccca 41970653  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 26921745 - 26921806
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggg 442  Q
    |||||||||||||||||||||| | ||||| |||||| |  |||| ||||||||| ||||||    
T  26921745 aaaatatttgacacaaatacaatatcatgggtagtttggatatttcaaccataaattagggg 26921806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 22616321 - 22616357
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagttt 417  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  22616321 aaaatatttgacacaaatacgacaccatgggtagttt 22616357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 38364174 - 38364210
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagttt 417  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  38364174 aaaatatttgacacaaatacgacaccatgggtagttt 38364210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 38672432 - 38672468
Alignment:
Q  381 aaaatatttgacacaaatacaacaccatggatagttt 417  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  38672432 aaaatatttgacacaaattcaacatcatggatagttt 38672468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 15889490 - 15889451
Alignment:
Q  378 cataaaatatttgacacaaatacaacaccatggatagttt 417  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  15889490 cataaaatatttgacacaaattcaacatcatggatagttt 15889451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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