View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_low_18 (Length: 492)
Name: NF3892_low_18
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Complemental strand, 40255318 - 40254855
Alignment:
| Q |
15 |
catatacgacattggttcattcttcaccaataaaccagaaccagaaccagaaccatgacgcatatgagaaggtccattagaactcgaaggaaatgctaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40255318 |
catatacgacattggttcattcttcactaataaaccagaaccagaacta------tgacgcatatgagaaggtccattagaactcgaaggaaatgctaaa |
40255225 |
T |
|
| Q |
115 |
ctcaaagaagttggaacaacactttccttatcataaatattgttagataaataattctccttgttgatgctatgaagtgaaaggctagaggaagcaacat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40255224 |
ctcaaagaagttggaacaacactttccttatcataaatattgttagataaataattctccttgttgatgctatgaagtgaaaggctagaggaagcaacat |
40255125 |
T |
|
| Q |
215 |
catcaatatttgcatttactattccaaatttgttttgatgaannnnnnnnnnnnnnaaggccatgttgcatgattcaactattcttgtgttagatgaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40255124 |
catcaatatttgcatttactattccaaatttgttttgatgaattttttgcttttttaaggccatgttgcatgattcaactattcttgtgttagatgaatt |
40255025 |
T |
|
| Q |
315 |
cattgaggaaattttcttctcattatttgattggaggctagacaaagataaatcacatgaaagttgttgctttggatgatcaagttgtggaatagtacta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40255024 |
cattgaggaaattttcttctcattatttgattggaggctagacaaagataaatcacatgaaagttgttgctttggatgatcaagttgtggaatagtacta |
40254925 |
T |
|
| Q |
415 |
tatgtcttagcttgtgtagatggctgaaaatttcttattaacaattgaagttgatctcttgcttcatctc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40254924 |
tatgtcttagcttgtgtagatggctgaaaatttcttattaacaattgaagttgatctcttgcttcatctc |
40254855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University