View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_24 (Length: 453)
Name: NF3892_low_24
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 27625588 - 27625317
Alignment:
| Q |
18 |
atgaaatcttctttatctgttcacacaaagaagatattaactttggttggtttttgttctgtttatctatcaaaaatgaaaatctgaattttgtaacatt |
117 |
Q |
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| T |
27625588 |
atgaaatcttctttatttgttcacacaaagaagatattaactttggttggtttttgttctgtttatctatcaaaaatgaaaatctgaattgtgtaacatt |
27625489 |
T |
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| Q |
118 |
tgacaaaattgtgatgtacattatttaccacttgaacttaagtaataataacataagtattgtcatagtctcttaacaaattctgtcagatgaaagaatg |
217 |
Q |
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| T |
27625488 |
tgacaaaattgtgatgtacattatttaccacttgaacttaagtaataataacataagtattgtcatagtctcttaacaaattctgtcagatgaaagaatg |
27625389 |
T |
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| Q |
218 |
agnnnnnnngtcagattgttcacatgtgcaatggtagaataataaatgctaagagaaggacttggcatggtc |
289 |
Q |
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| T |
27625388 |
agaaaaaaagtcagattgttcacatgtgcaatggtagaataataaatgctaagagaaggacttggcatggtc |
27625317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 353 - 437
Target Start/End: Complemental strand, 27625254 - 27625169
Alignment:
| Q |
353 |
ttaatgatgtataattttattcgtgtgtccaaatatt-tattatttggaatttcgaacaaacaagtatttttctaatgcttttgtc |
437 |
Q |
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| T |
27625254 |
ttaatgatgtataattttattcgtgtgtccaaatattatattatttggaatttcgaacaaacaagtatttttctaatgcttttgtc |
27625169 |
T |
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