View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_3 (Length: 734)
Name: NF3892_low_3
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 100 - 536
Target Start/End: Original strand, 7089340 - 7089776
Alignment:
| Q |
100 |
atagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaactttac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7089340 |
atagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaagtttac |
7089439 |
T |
|
| Q |
200 |
tctggaaaacagaaagatgaaaaagaatactacnnnnnnnngcctaaaagaaggtaattcaatttttaacaactacatacttcatttgattcaaagagaa |
299 |
Q |
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| T |
7089440 |
tctggaaaacagaaagatgaaaaagaatactacaaaaaaaagcctaaaagaaggtaattcaagttttaacaactacatacttcatttgattcaaagagaa |
7089539 |
T |
|
| Q |
300 |
gtcttagtattattttacaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaatcttaccagggcttagaccaagat |
399 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089540 |
gtcttagtattattttaaaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaatcttaccagggcttagaccaagat |
7089639 |
T |
|
| Q |
400 |
ataaactatatgtagaagtagccctttccctcttgataaaacactgaattggattgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaatt |
499 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089640 |
ataaactatatgtagaagtagccctttccctcttaataaaacactgaattggattgtctcttggaccaggctgaaaaacaaaataaaggacaaagtaatt |
7089739 |
T |
|
| Q |
500 |
acacatttagtaccttacaccatgtgcttccaagctt |
536 |
Q |
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| T |
7089740 |
acacatttagtaccttacaccatgtgcttccaagctt |
7089776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 276 - 536
Target Start/End: Original strand, 7669346 - 7669606
Alignment:
| Q |
276 |
atacttcatttgattcaaagagaagtcttagtattattttacaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaa |
375 |
Q |
| |
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|||||| ||||||||||||||||| ||| || | |||||| |||||| | ||||||||||||||| |||||||||| ||||||||||||||||| |||| |
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| T |
7669346 |
atacttaatttgattcaaagagaaaccttggtgtgattttagaaaaatccaaacaaaattttgttatcaaatagagaataatttcatgtgagcacaacaa |
7669445 |
T |
|
| Q |
376 |
tcttaccagggcttagaccaagatataaactatatgtagaagtagccctttccctcttgataaaacactgaattggattgtctcttggaccaggctgaaa |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7669446 |
tcttaccagggcttagaccaagatataaactatatgtagaagtcgccctttctctcttgataaaacactgaattggattgtctcttggacaaggctgaaa |
7669545 |
T |
|
| Q |
476 |
aacaaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
536 |
Q |
| |
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|
| T |
7669546 |
aacaaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagctt |
7669606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 592 - 717
Target Start/End: Original strand, 7089827 - 7089952
Alignment:
| Q |
592 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
691 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089827 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
7089926 |
T |
|
| Q |
692 |
acaagctacaagtgcgcggcgagatg |
717 |
Q |
| |
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||||||||||||||| |||||||||| |
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|
| T |
7089927 |
acaagctacaagtgcacggcgagatg |
7089952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 592 - 717
Target Start/End: Original strand, 7669653 - 7669778
Alignment:
| Q |
592 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
691 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7669653 |
ttacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggc |
7669752 |
T |
|
| Q |
692 |
acaagctacaagtgcgcggcgagatg |
717 |
Q |
| |
|
||||||||||||||||||| |||||| |
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|
| T |
7669753 |
acaagctacaagtgcgcggagagatg |
7669778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 7668619 - 7668888
Alignment:
| Q |
1 |
ttctttgctgccaagagaagtttgctcatatcaccagaaagagctgcaaatacaataacacaattcactaagttaagagataatttagctactaacttca |
100 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | | || ||||| |||||||||| |
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| T |
7668619 |
ttctttgcagccaagagaagtttgctcat--caccagaaagagctgcaaatacaataacacaattcacaaagat----ggtagtttagagactaacttca |
7668712 |
T |
|
| Q |
101 |
tagattgagaatagttaagagactatttgttacatttccatactttagggactgaataagagataaggtaacagtttaatgattgaattgtaactttact |
200 |
Q |
| |
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||||| |||||||||| | ||||||||| |||||||||| || || | |||| |||| |||| || || | |||||| |||||||||| || || ||| |
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|
| T |
7668713 |
tagatcgagaatagtttatagactatttattacatttccgtagttcaaagactaaataggagagaatgtgatagtttagcgattgaattgaaagttcact |
7668812 |
T |
|
| Q |
201 |
ctggaaaacagaaagatgaaaaagaatactacnnnnnnnngcctaaaagaaggtaattcaatttttaacaactacat |
277 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| |
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|
| T |
7668813 |
ctggaaaacagaaggatgaaaaagaatactacaaaaaaaa-cctaaaagagggtatttcaagttttaacaactacat |
7668888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7089277 - 7089339
Alignment:
| Q |
1 |
ttctttgctgccaagagaagtttgctcatatcaccagaaagagctgcaaatacaataacacaa |
63 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7089277 |
ttctttgctgccaagagaagtttgctcatatcaccagaaagagctgcaaatacaataacacaa |
7089339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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