View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_30 (Length: 435)
Name: NF3892_low_30
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 3883273 - 3882849
Alignment:
| Q |
1 |
gcaaggatccgtaccatttagcaatgctcttaagataatttcattgggcctagttgttcaacacatgttaatcagggtgactgtattttggtagttgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3883273 |
gcaaggatccgtaccatttagcaatgctcttaagataatttcattgggcctagttgttcaacacatgttaatcagggtgactgtatttcggtagttgctt |
3883174 |
T |
|
| Q |
101 |
ttcacacacttctctcttctcgcgcgccctgctatattacaaagatatttatgttaagattataaaatgtgaacnnnnnnnnaaaggttttcagaatata |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
3883173 |
ttcacacacttctctcttctcgtgcgccctgctatattacaaagatatttatgttaagattatataatgtgaactttttttaaaaggttttcaaaatata |
3883074 |
T |
|
| Q |
201 |
tatctgaaatgtatattttttcattttggacctctcctttgggatgatagtcaatctaagttcggattatataatccgaagacgtgaaactttttgaatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3883073 |
tatctgaaatgtatattttttcattttggacctctcttttgggatgatagtcaatctaagttcggattatataatccgaagacgtgaaattttttgaatt |
3882974 |
T |
|
| Q |
301 |
atataatctaaaactcacttatatataagtttcacagtccaagtcaacaaatttcttggtccaagtcaacatgctcaagtaggaggagtgcgcgtaaaaa |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882973 |
atataatctaaaactcacctatatataagtttcacaatccaaatcaacaaatttcttgatccaagtcaacatgctcaagtaggaggagtgcgcgtaaaaa |
3882874 |
T |
|
| Q |
401 |
taacatgtctcttcgcccacctttg |
425 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
3882873 |
taacatgtctcttcacccacctttg |
3882849 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 25369214 - 25369151
Alignment:
| Q |
359 |
gtccaagtcaacatgctcaagtaggaggagtgcgcgtaaaaataacatgtctcttcgcccacct |
422 |
Q |
| |
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||||||||||||| |||||||||||| ||||||| ||||| ||| ||||||||| ||||||| |
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| T |
25369214 |
gtccaagtcaacaggctcaagtaggataagtgcgcataaaagtaatatgtctcttaacccacct |
25369151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 12882062 - 12881984
Alignment:
| Q |
347 |
acaaatttcttggtccaagtcaacatgctcaagtaggaggagtgcgcgtaaaaataacatgtctcttcgcccacctttg |
425 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| ||||| | |||| ||| ||||||| | |||||||||| |
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| T |
12882062 |
acaaatttcacggtccaagtcaacatgctcaagtaggaaaagtgcttgcaaaagtaatatgtctccttacccacctttg |
12881984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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