View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_31 (Length: 429)
Name: NF3892_low_31
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 11128806 - 11128399
Alignment:
| Q |
18 |
atagaaagattgttgcataagcaaaacattgcagagtgagtgcttttgctttgtagcttcacaaaataataaccgtgcgctatataacaacgataagatc |
117 |
Q |
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| T |
11128806 |
atagaaagattgttgcataagcaaaacattgcagagtgagtgcttttgctttgtagcttcacaaaataataaccgtgcgctatataacaacgataagatc |
11128707 |
T |
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| Q |
118 |
agaaagctgcccttaaatatcttagcaacacttcttctatcatctcatctatttatcattatttatttatttacaaatgaaatgtaaatttgtcattgat |
217 |
Q |
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| T |
11128706 |
agaaagctgcccttaaatatcttagcaacacttcttctatcatctcatctatttatcattatttatttatttacaaatgaaatgtaaaattgtcattgat |
11128607 |
T |
|
| Q |
218 |
gaacaaaacaattcatctatgatctactaaaattatttaacgaaaataatcaatcaaatacattcattaaattccttaannnnnnnnnnnnnnnnnnata |
317 |
Q |
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| T |
11128606 |
gaacaaaacaattcatctatgatctactaaaattatttaacgaaaataatcaatcaaatacatccattaaattccttaattttattttttattttttata |
11128507 |
T |
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| Q |
318 |
taaacaa--------ttttgaatagaaggtaaacatgcaataagctgcgtccccaagtcattttggatagaaaaacaaatcatcgtaaacacattattta |
409 |
Q |
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| T |
11128506 |
taaacaattatttccttttgaatagaaggcaaacatgcaataagctgcgtccccaagtcattttggatagaaaaacaaatcattgtaaacacatcattta |
11128407 |
T |
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| Q |
410 |
tagaccta |
417 |
Q |
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| T |
11128406 |
tagaccta |
11128399 |
T |
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