View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_35 (Length: 418)
Name: NF3892_low_35
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 16616920 - 16616538
Alignment:
| Q |
17 |
tgaaggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16616920 |
tgaaggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattc |
16616821 |
T |
|
| Q |
117 |
tgtcttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcct |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
16616820 |
tgttttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgcggttgtttattcct |
16616721 |
T |
|
| Q |
217 |
gaaagttatccgtcttcctctcttgttattctggacgaattgccgttgacagtcaggttagagactaccattgtattaccaagatataagcaattatgca |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16616720 |
gaaagttatccgtcttcctctcttgttattctggacgaattgccgttgacagtcaggttagagactaccattgtattatcaagatataagcaattatgca |
16616621 |
T |
|
| Q |
317 |
tctagttctgagtagttatcaggttatgcttgtatactttgagactatttagtatcaattaaatgaattttcaagagaggttg |
399 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16616620 |
tctagttctgagtagttatcaggttatgcttgtatactttgagactatttagtatcaattaaatgaattttcaagagaggttg |
16616538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 16628617 - 16628354
Alignment:
| Q |
20 |
aggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgt |
119 |
Q |
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|||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
16628617 |
aggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgt |
16628518 |
T |
|
| Q |
120 |
cttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcctgaa |
219 |
Q |
| |
|
| ||||||||||| |||| |||||||||||| ||||||| ||||||| ||||| | || ||||||||||||| || ||| |||| |||||||||| | |
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| T |
16628517 |
ttggaattatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgca |
16628418 |
T |
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| Q |
220 |
agttatccgtcttcctctcttgttattctggacgaattgccgttgacagtcaggttagagacta |
283 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||||| |
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| T |
16628417 |
agttatccgtcttcctctcttatttttctggacgaattaccgttgcaagacaggttagagacta |
16628354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 16637498 - 16637235
Alignment:
| Q |
20 |
aggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgt |
119 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
16637498 |
aggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgt |
16637399 |
T |
|
| Q |
120 |
cttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcctgaa |
219 |
Q |
| |
|
| ||||||||||| |||| |||||||||||| ||||||| ||||||| ||||| | || ||||||||||||| || ||| |||| |||||||||| | |
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| T |
16637398 |
ttggaattatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgca |
16637299 |
T |
|
| Q |
220 |
agttatccgtcttcctctcttgttattctggacgaattgccgttgacagtcaggttagagacta |
283 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| |||||| || |||||||||||||| |
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| T |
16637298 |
agttatccgtcttcctctcttatttttctggacgaattaccgttgcaagacaggttagagacta |
16637235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 16790155 - 16790414
Alignment:
| Q |
17 |
tgaaggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattc |
116 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||| |
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|
| T |
16790155 |
tgaaggatcaattgttaaaatcatgtacaatgcagtgactatcgatcagaaccttgtatctcacttcacttatgataaaaaggtaaatggttttatattc |
16790254 |
T |
|
| Q |
117 |
tgtcttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcct |
216 |
Q |
| |
|
| | || || |||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| || |||| ||||||||| |
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| T |
16790255 |
tattttcaactatttgcattgaatattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaaccgttgcggttgcttattcct |
16790354 |
T |
|
| Q |
217 |
gaaagttatccgtcttcctctcttgttattctggacgaattgccgttgacagtcaggtta |
276 |
Q |
| |
|
| ||||||| ||||| |||||||||||||| | |||||||| |||| ||||| |||| |
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|
| T |
16790355 |
gcaagttatatctcttcatctcttgttattctaaatgaattgcccttgaaagtcacgtta |
16790414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 16791577 - 16791816
Alignment:
| Q |
33 |
aaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgtcttgaattatttg |
132 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||| |||||||||||| |||| |||||||||||||| |||||||||||||| | || || |||||| |
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| T |
16791577 |
aaaatcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgattttatattctattttcaactatttg |
16791676 |
T |
|
| Q |
133 |
cattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcctgaaagttatccgtctt |
232 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||| ||||||| || ||||||||||||||||||| || |||| |||||||||| ||||||| |||| |
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|
| T |
16791677 |
cattgattattttgattttcatctcattgattat-tatattgattctgtagtcattgatcaaaccgttgaggttgcttattcctgcaagttatatctctt |
16791775 |
T |
|
| Q |
233 |
cctctcttgt--tattctggacgaattgccgttgacagtca |
271 |
Q |
| |
|
| |||||||| ||||||||| |||||| ||||| ||||| |
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| T |
16791776 |
cttctcttgttatattctggatgaattgtggttgaaagtca |
16791816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 16792559 - 16792318
Alignment:
| Q |
17 |
tgaaggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattc |
116 |
Q |
| |
|
|||| |||||||||| ||||| ||||||| |||| || |||||||||||| || |||||||||||| | |||||||||||| ||||||||||||||||| |
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|
| T |
16792559 |
tgaatgattacttgttaaaatcatgtacattgcaatgactatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgattttatatta |
16792460 |
T |
|
| Q |
117 |
tgtcttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcct |
216 |
Q |
| |
|
||| || ||||||| |||||| |||||||||||||| |||| |||||||||||| |||||| | ||||||||||||||| | |||| || |||| | |
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|
| T |
16792459 |
tgttttcaattattcacattgattattttgattttcatttcattgactatgtatataagttttgca-tcattgatcaaaccatggcggttgctcattctt |
16792361 |
T |
|
| Q |
217 |
gaaagttatccgtcttcctctcttgttattctggacgaattgc |
259 |
Q |
| |
|
| ||||||||| |||||||||||| |||||||| | ||||||| |
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|
| T |
16792360 |
gtaagttatccatcttcctctcttcttattctgtatgaattgc |
16792318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 16790647 - 16790415
Alignment:
| Q |
17 |
tgaaggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgata-aaaaggtaaatgattttatatt |
115 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||| || |||||||||||| || ||||||||| || |||||||||| |||| ||||||||||||||||| |
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|
| T |
16790647 |
tgaatgattacttgttaaaatcatgtacaatgcaatgactatcaatcaaagccatgtatctcatttcacttctgataaaaaatgtaaatgattttatatt |
16790548 |
T |
|
| Q |
116 |
ctgtcttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcc |
215 |
Q |
| |
|
| | ||||| |||| |||||| ||||||||||| || |||| ||||||||| || |||||| | |||||||||||| || ||||||| ||||||| |
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|
| T |
16790547 |
atcttttgaactattcacattgattattttgattttgatttcattgactatgtaaataagttttgca-tcattgatcaaatcattgtggttgcttattct |
16790449 |
T |
|
| Q |
216 |
tgaaagttatccgtcttcctctcttgttattctg |
249 |
Q |
| |
|
|| ||||||||| |||||||||||| |||||||| |
|
|
| T |
16790448 |
tgtaagttatccatcttcctctcttcttattctg |
16790415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 16628317 - 16628263
Alignment:
| Q |
311 |
tatgcatctagttctgagtagttatcaggttatgcttgtatactttgagactatt |
365 |
Q |
| |
|
||||||| ||| | ||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16628317 |
tatgcatataggtttgagtagttatcaagttatgtttgtatactttgagactatt |
16628263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 16637198 - 16637144
Alignment:
| Q |
311 |
tatgcatctagttctgagtagttatcaggttatgcttgtatactttgagactatt |
365 |
Q |
| |
|
||||||| ||| | ||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16637198 |
tatgcatataggtttgagtagttatcaagttatgtttgtatactttgagactatt |
16637144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 38877446 - 38877187
Alignment:
| Q |
21 |
ggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgtc |
120 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||| ||||| |||||||||||||||| || | |||||||||||| |||| ||||||||||||| |
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|
| T |
38877446 |
ggattacttcttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatggttttatattctgtt |
38877347 |
T |
|
| Q |
121 |
ttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgtggtttcttattcctgaaa |
220 |
Q |
| |
|
||||| |||| |||| | ||||||||||| ||||||| | ||||||||||| ||| | |||||||||||||||| ||||||| ||||||||| || |
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|
| T |
38877346 |
ttgaactattcacattaattattttgatttttatctcataggctatgtatatttgttcttcagtcattgatcaaaccgttgtggttgcttattcctccaa |
38877247 |
T |
|
| Q |
221 |
gttatccgtcttcctctcttgttattctggacgaattgccgttgacagtcaggttagaga |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
38877246 |
gttatccgtcttcctctcttgttattctagacgaattgccgttggaagtcaggttagaga |
38877187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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