View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_39 (Length: 388)
Name: NF3892_low_39
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 2318934 - 2319241
Alignment:
| Q |
18 |
agacagaaatttcatcaaaagcaaatgtaattcgaaacaacaataaatgacatatatattgattagattcgaaacataaagacagacaaacaacataaca |
117 |
Q |
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| T |
2318934 |
agacagaaatttcatcgaaagcaaatgtaattcgaaacaacaataaatgacatatatattgattagattcgaaacataaagacagacaaacaacataaga |
2319033 |
T |
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| Q |
118 |
atctgatcttgatagaaaaagaggaagagttaattaattaattaagaaatgaagtatacttgaacttgaggggattcatcagaaggattgtttgtggcgg |
217 |
Q |
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| T |
2319034 |
atctgatcttgatagaaaaagaggaagagttaattaattaattaagaaatgaagtatacttgaacttgaggggattcatcagaaggattgtttgtggcgg |
2319133 |
T |
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| Q |
218 |
cattgatagtggagagagaagaagaaatgttattgatcttcgaagcttctggagaatccatcaagaactgtttcacactcacactcgatccagtcgattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2319134 |
cattgatagtggagagagaagaagaaatgttattgatcttcgaagcttctggagaatccatcaagaactgtttcacactcacactcgatccagtcgattt |
2319233 |
T |
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| Q |
318 |
ccctataa |
325 |
Q |
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|||||||| |
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| T |
2319234 |
ccctataa |
2319241 |
T |
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