View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_4 (Length: 707)

Name: NF3892_low_4
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_4
NF3892_low_4
[»] chr8 (5 HSPs)
chr8 (39-680)||(35113665-35114296)
chr8 (402-443)||(31802859-31802900)
chr8 (402-443)||(8402292-8402333)
chr8 (402-443)||(39165050-39165091)
chr8 (402-442)||(42281439-42281479)
[»] chr7 (1 HSPs)
chr7 (406-454)||(6428199-6428247)
[»] chr4 (1 HSPs)
chr4 (396-443)||(37677713-37677760)
[»] chr3 (1 HSPs)
chr3 (479-512)||(2007120-2007153)
[»] chr1 (3 HSPs)
chr1 (402-443)||(32635210-32635251)
chr1 (417-461)||(4069609-4069653)
chr1 (416-460)||(33725221-33725265)


Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 39 - 680
Target Start/End: Original strand, 35113665 - 35114296
Alignment:
Q  39 ctgatatctctcgatgctcggtttgtgtacttcatgaattggttgcatggtgatataagacaatataacatcgaggaccctaaacatcctatgttgactg 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35113665 ctgatatctctcgatgctcggtttgtgtacttcatgaattggttgcatggtgatataagacaatataacatcgaggaccctaaacatcctatgttgactg 35113764  T
Q  139 gccaagtatggtttggtggacagttccagaaaggaagctctatagttgtcacaacagaagatggtaatacttggcaatcttatgttccatacattcaggt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35113765 gccaagtatggtttggtggacagttccagaaaggaagctctatagttgtcacaacagaagatggtaatacttggcaatcttatgttccatacattcaggt 35113864  T
Q  239 tagtgctacgtaattttttgaactatatgtctagtcttgagcgtgaggagtgtgaggggggtgttaagagtctcacatcgactagagacatggcatgtgc 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||| |||    
T  35113865 tagtgctacgtaattttttgaactatatgtctagtcttgagcgtgagg---------gggatgttaagagtctcacatcgactagagacatggcatttgc 35113955  T
Q  339 aatgtttatagaacttgaacaatcctaaccttataattcaaannnnnnnnnnnnnggtcaaacagcctagtagctataaattcaccccttaaggtgaata 438  Q
    ||||||||||||||||||||||||||||||||||||| |||              |||||| ||||||||||||||||||||||||| ||||||||||||    
T  35113956 aatgtttatagaacttgaacaatcctaaccttataatccaa-ttattatttttttggtcaagcagcctagtagctataaattcaccctttaaggtgaata 35114054  T
Q  439 agtggaaaatccagggtttaaactatttcctttgcataccgcaatatttctaccaactgagttatgttcacgggataatataacccaattttataaggtt 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35114055 agtggaaaatccagggtttaaactatttcctttgcataccgcaatatttctaccaactgagttatgctcacgggataatataacccaattttataaggtt 35114154  T
Q  539 gaatttggctcaactcaaattttaagagtcattcacgtatatcacatttggagttttaattggttatgagaagcagaattatgtgctacatggatcataa 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35114155 gaatttggctcaactcaaattttaagagtcattcacgtatatcacatttggagttttaattggttatgagaagcagaattatgtgctacatggatcataa 35114254  T
Q  639 ttaatttggttatgttagaactaccatgattgtatctgatgc 680  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35114255 ttaatttggttatgttagaactaccatgattgtatctgatgc 35114296  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 31802859 - 31802900
Alignment:
Q  402 agcctagtagctataaattcaccccttaaggtgaataagtgg 443  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  31802859 agcctagtggctataaattcacctcttaaggtgaataagtgg 31802900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 8402292 - 8402333
Alignment:
Q  402 agcctagtagctataaattcaccccttaaggtgaataagtgg 443  Q
    |||||||| |||| ||||||||| ||||||||||||||||||    
T  8402292 agcctagtggctagaaattcacctcttaaggtgaataagtgg 8402333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 39165091 - 39165050
Alignment:
Q  402 agcctagtagctataaattcaccccttaaggtgaataagtgg 443  Q
    |||||||| |||| ||||||||| ||||||||||||||||||    
T  39165091 agcctagtggctagaaattcacctcttaaggtgaataagtgg 39165050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 42281439 - 42281479
Alignment:
Q  402 agcctagtagctataaattcaccccttaaggtgaataagtg 442  Q
    |||||| | |||| |||||||||||||||||||||||||||    
T  42281439 agcctaattgctaaaaattcaccccttaaggtgaataagtg 42281479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 6428247 - 6428199
Alignment:
Q  406 tagtagctataaattcaccccttaaggtgaataagtggaaaatccaggg 454  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  6428247 tagtggctagaaattcaccccttaaggtgaataagtggagaatccaggg 6428199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 37677760 - 37677713
Alignment:
Q  396 tcaaacagcctagtagctataaattcaccccttaaggtgaataagtgg 443  Q
    ||||| |||||||| |||| || |||||||||||||||||||||||||    
T  37677760 tcaaatagcctagtggctagaagttcaccccttaaggtgaataagtgg 37677713  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 512
Target Start/End: Original strand, 2007120 - 2007153
Alignment:
Q  479 gcaatatttctaccaactgagttatgttcacggg 512  Q
    |||||||||||||||||||||||| |||||||||    
T  2007120 gcaatatttctaccaactgagttaagttcacggg 2007153  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 32635251 - 32635210
Alignment:
Q  402 agcctagtagctataaattcaccccttaaggtgaataagtgg 443  Q
    |||||||| |||| ||||||||| ||||||||||||||||||    
T  32635251 agcctagtggctagaaattcacctcttaaggtgaataagtgg 32635210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 4069609 - 4069653
Alignment:
Q  417 aattcaccccttaaggtgaataagtggaaaatccagggtttaaac 461  Q
    |||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  4069609 aattcacctcttaaggtgaataagtggagaatccggggttcaaac 4069653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 416 - 460
Target Start/End: Original strand, 33725221 - 33725265
Alignment:
Q  416 aaattcaccccttaaggtgaataagtggaaaatccagggtttaaa 460  Q
    ||||||||||||||| ||||||||||||| |||||  ||||||||    
T  33725221 aaattcaccccttaaagtgaataagtggagaatccgtggtttaaa 33725265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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