View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_40 (Length: 384)
Name: NF3892_low_40
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 29901301 - 29900941
Alignment:
| Q |
18 |
tgagagacctccactaatatggattttgaagtggactggaagacaattgtgggcagcatctatgagaggaatatctagtagcttcctgatcataaatgga |
117 |
Q |
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| T |
29901301 |
tgagagacctccacttatatggattttgaagtggactggaagacaattgtgggcagcatctatgagaggaatatctagtagcttcctgatcataaatgga |
29901202 |
T |
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| Q |
118 |
gtccacacatgccttcatatcttccaaatttgttcattgattttctgaaggtacttatatatgatgatgttgagcttggcagctgcattagtacatatat |
217 |
Q |
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| T |
29901201 |
gtccacacatgccttcttatcttccaaatttgttcattgattttctgaaggtacttatatatgatgatgttgagcttggcagctgcattagtacatatat |
29901102 |
T |
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| Q |
218 |
tttcaaacttcaagtggaatgaagttcatgtctcataccagatgttcgaatgcaatttccattcaatagcatttggtctatacattaaaaacagaaagaa |
317 |
Q |
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| T |
29901101 |
tttcaaacttcaagtggaatgaagttcatgtctcataccagatgttcgaatgcaatttccattcaatagcatttggtctatacattaaaaacagaaagaa |
29901002 |
T |
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| Q |
318 |
gttcatttttccagtaatatacaatgggtgaaaccgatcttattgtacacccctttgattc |
378 |
Q |
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| T |
29901001 |
gttcatttttccagtaatatacaattggtgaaaccgatcttattgtacaccccttttattc |
29900941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 227 - 367
Target Start/End: Complemental strand, 29886803 - 29886666
Alignment:
| Q |
227 |
tcaagtggaatgaagttcatgtctcataccagatgttcgaatgcaatttccattcaatagcatttggtctatacattaaaaacagaaagaagttcatttt |
326 |
Q |
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| T |
29886803 |
tcaaggggaatgaagttcatgtctcacaccaggcgtttgaatgcaattttcattcaatagaatttggtctatgcattaaaaacaga---aagttcatttt |
29886707 |
T |
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| Q |
327 |
tccagtaatatacaatgggtgaaaccgatcttattgtacac |
367 |
Q |
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| T |
29886706 |
tccagtaatatacaattggtgaaaccgatcttattgcacac |
29886666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 29886911 - 29886851
Alignment:
| Q |
33 |
aatatggattttgaagtggactggaagacaattgtgggcagcatctatgagaggaatatct |
93 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29886911 |
aatattgattttgaagtggacttgaagacaattgtgggcagcatctatgagaggaatatct |
29886851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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