View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_41 (Length: 380)

Name: NF3892_low_41
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_41
NF3892_low_41
[»] chr2 (3 HSPs)
chr2 (221-370)||(38919249-38919398)
chr2 (19-166)||(38919453-38919600)
chr2 (321-370)||(11307971-11308020)
[»] chr6 (4 HSPs)
chr6 (278-355)||(24645528-24645605)
chr6 (283-355)||(4877990-4878061)
chr6 (285-321)||(5000557-5000593)
chr6 (277-321)||(17341615-17341659)
[»] chr8 (4 HSPs)
chr8 (278-355)||(36450689-36450766)
chr8 (325-370)||(13845277-13845322)
chr8 (283-348)||(39820482-39820547)
chr8 (283-315)||(34223021-34223053)
[»] chr7 (3 HSPs)
chr7 (279-354)||(7133208-7133284)
chr7 (283-332)||(40131939-40131989)
chr7 (283-348)||(23751953-23752018)
[»] chr5 (3 HSPs)
chr5 (306-354)||(43554574-43554622)
chr5 (285-348)||(7997108-7997172)
chr5 (283-354)||(32766872-32766943)
[»] chr3 (5 HSPs)
chr3 (283-354)||(4704220-4704292)
chr3 (281-332)||(27277778-27277829)
chr3 (282-354)||(21211341-21211414)
chr3 (281-321)||(17005546-17005586)
chr3 (285-348)||(24204983-24205047)
[»] chr1 (5 HSPs)
chr1 (283-354)||(9690213-9690285)
chr1 (283-332)||(34741916-34741965)
chr1 (283-319)||(32724044-32724080)
chr1 (282-354)||(42004881-42004953)
chr1 (283-331)||(48450550-48450598)
[»] chr4 (8 HSPs)
chr4 (303-361)||(10133749-10133808)
chr4 (283-348)||(18513175-18513241)
chr4 (281-370)||(31243474-31243564)
chr4 (283-355)||(34306744-34306816)
chr4 (283-354)||(16184879-16184950)
chr4 (283-354)||(24343560-24343632)
chr4 (286-353)||(46715416-46715484)
chr4 (283-354)||(53381530-53381602)
[»] scaffold0007 (1 HSPs)
scaffold0007 (285-365)||(225199-225279)
[»] scaffold0020 (1 HSPs)
scaffold0020 (281-332)||(135261-135313)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 221 - 370
Target Start/End: Complemental strand, 38919398 - 38919249
Alignment:
Q  221 tcagaaggtttcacaatctttgccccaacagacaatgccttccaaaatcttccatcaggtaactatgaagcacaaacactcttcagattagacgtgtcct 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919398 tcagaaggtttcacaatctttgccccaacagacaatgccttccaaaatcttccatcaggtaactatgaagcacaaacactcttcagattagacgtgtcct 38919299  T
Q  321 gtgtcggacacgcgtcagtatccgacaccgacactaacacgacacctatg 370  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38919298 gtgtcggacacgcatcagtatccgacaccgacactaacacgacacctatg 38919249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 38919600 - 38919453
Alignment:
Q  19 tacaacacctcttgcactcattcttctcactctcattcacttcttaactccacaaatccaagcccaagccccagcaccagcaccctcaggcccaatcaac 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919600 tacaacacctcttgcactcattcttctcactctcattcccttcttaactccacaaatccaagcccaagccccagcaccagcaccctcaggcccaatcaac 38919501  T
Q  119 atcacaacaatctttgaaaaagctggtcaatacaacttcctcattcgt 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919500 atcacaacaatctttgaaaaagctggtcaatacaacttcctcattcgt 38919453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 11307971 - 11308020
Alignment:
Q  321 gtgtcggacacgcgtcagtatccgacaccgacactaacacgacacctatg 370  Q
    |||||||||||||||| || ||| ||||||||||  ||||||||||||||    
T  11307971 gtgtcggacacgcgtcggtgtccaacaccgacaccgacacgacacctatg 11308020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 24645605 - 24645528
Alignment:
Q  278 ggtaactatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacgcgtcagtatccgacaccgacact 355  Q
    ||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||| ||| || || ||||||||||||    
T  24645605 ggtaactatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtc-gtgtctgacaccgacact 24645528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 4878061 - 4877990
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacacgcgtcagtatccgacaccgacact 355  Q
    |||||||||||  |||||| || |||||| |||||||||||||||||| | ||| || |||||||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcctgtgtcggacatgtgtc-gtgtccgacaccgacact 4877990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 5000557 - 5000593
Alignment:
Q  285 atgaagcacaaacactcttcagattagacgtgtcctg 321  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  5000557 atgaagcacgaacactcttcggattagacgtgtcctg 5000593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 17341615 - 17341659
Alignment:
Q  277 aggtaactatgaagcacaaacactcttcagattagacgtgtcctg 321  Q
    |||||| |||||||||||||||||| || |||||| |||||||||    
T  17341615 aggtaattatgaagcacaaacactcctcggattaggcgtgtcctg 17341659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 36450689 - 36450766
Alignment:
Q  278 ggtaactatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacgcgtcagtatccgacaccgacact 355  Q
    |||| |||||||||||| |||||| || |||||| |||||||| |||||||||||||||| || ||||||||| |||||    
T  36450689 ggtagctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtc-gtgtccgacacctacact 36450766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 13845322 - 13845277
Alignment:
Q  325 cggacacgcgtcagtatccgacaccgacactaacacgacacctatg 370  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||    
T  13845322 cggacacgcgtcagtgtccgacaccgacacagacacgacacctatg 13845277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 39820547 - 39820482
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacacgcgtcagtatccgacac 348  Q
    |||||||||||  |||||  || |||||| ||||||| |||||||||||||||| || ||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgtccgacac 39820482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 34223053 - 34223021
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgt 315  Q
    ||||||||||||||||||||| |||||||||||    
T  34223053 ctatgaagcacaaacactctttagattagacgt 34223021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 7133208 - 7133284
Alignment:
Q  279 gtaactatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||||||||||||  || ||| |||||||||  ||||||  |||||||||||||||| || ||||||||||||||    
T  7133208 gtaactatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacac 7133284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 40131939 - 40131989
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgt-cctgtgtcggacacg 332  Q
    |||||||||||| |||||| || |||||||||||| |||||||||||||||    
T  40131939 ctatgaagcacagacactcctcggattagacgtgtccctgtgtcggacacg 40131989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 23752018 - 23751953
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacacgcgtcagtatccgacac 348  Q
    |||||||||||| |||||  || |||||| ||||||| ||||| |||||||||| || ||||||||    
T  23752018 ctatgaagcacagacacttatcggattaggcgtgtcccgtgtctgacacgcgtcggtgtccgacac 23751953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 43554622 - 43554574
Alignment:
Q  306 gattagacgtgtcctgtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||| ||||||| |||||||||||||||| || ||||||||||||||    
T  43554622 gattaggcgtgtcccgtgtcggacacgcgtcggtgtccgacaccgacac 43554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 7997108 - 7997172
Alignment:
Q  285 atgaagcacaaacactcttcagattagacgtgtcctg-tgtcggacacgcgtcagtatccgacac 348  Q
    ||||||||||||||||  ||  |||||  |||||||| |||||||||||||||||| ||||||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacac 7997172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 32766872 - 32766943
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||||||||  |||||| ||||||||||||| |||| |||||||||||| ||| || | ||||||||||||    
T  32766872 ctatgaagcacggacactcctcagattagacgtatcctggtgtcggacacgtgtc-gttttcgacaccgacac 32766943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 4704220 - 4704292
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||| ||||||||| || |||||||||| ||||||| |||| |||||||||| ||| || |||||||||||    
T  4704220 ctatgacgcacaaacattcctcagattagatgtgtcctagtgttggacacgcgttagtgtcagacaccgacac 4704292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 27277778 - 27277829
Alignment:
Q  281 aactatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacacg 332  Q
    |||||||||||||| |||||| || |||||||| ||||| ||||||||||||    
T  27277778 aactatgaagcacatacactcctcggattagacatgtcccgtgtcggacacg 27277829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 21211414 - 21211341
Alignment:
Q  282 actatgaagcacaaacactcttcagattagacgtgt-cctgtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||||||||||||||||| || ||||||  |||| || |||||||||||||||| || ||  ||||||||||    
T  21211414 actatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacac 21211341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 17005546 - 17005586
Alignment:
Q  281 aactatgaagcacaaacactcttcagattagacgtgtcctg 321  Q
    ||||||||||||||||||||| || ||||||| ||||||||    
T  17005546 aactatgaagcacaaacactcctcggattagaggtgtcctg 17005586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 24204983 - 24205047
Alignment:
Q  285 atgaagcacaaacactcttcagattagacgtgtcctg-tgtcggacacgcgtcagtatccgacac 348  Q
    |||||||||  |||||| ||  ||||| ||||||||| |||||||||||||||||| ||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacac 24205047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 9690213 - 9690285
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgt-cctgtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||||||||||||||||| | |||||| ||||| || |||||||||||| ||||||  ||||| |||||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtcagtggccgacgccgacac 9690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 34741965 - 34741916
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacacg 332  Q
    |||||||||||  ||||||||| |||||| ||||||| ||||||||||||    
T  34741965 ctatgaagcacggacactcttcggattaggcgtgtcccgtgtcggacacg 34741916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 32724044 - 32724080
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcc 319  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  32724044 ctatgaagcacaaagactcttcagattaaacgtgtcc 32724080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 42004881 - 42004953
Alignment:
Q  282 actatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    ||||||||||||  |||||||||  ||||| |||||   |||||||||| ||||| || ||||||||||||||    
T  42004881 actatgaagcacggacactcttcgaattaggcgtgtttagtgtcggacatgcgtcggtgtccgacaccgacac 42004953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 48450550 - 48450598
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacac 331  Q
    |||||||||||  |||||| || |||||||||||||||||||| |||||    
T  48450550 ctatgaagcacggacactcctcggattagacgtgtcctgtgtccgacac 48450598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 10133808 - 10133749
Alignment:
Q  303 tcagattagacgtgtcctg-tgtcggacacgcgtcagtatccgacaccgacactaacacg 361  Q
    |||||||||  |||||||| |||||||||||||||||| || ||||||||||| ||||||    
T  10133808 tcagattaggtgtgtcctggtgtcggacacgcgtcagtgtctgacaccgacaccaacacg 10133749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 18513175 - 18513241
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacgcgtcagtatccgacac 348  Q
    |||||||||||  |||||| ||||||||| |||||||| ||||||||||| |||| || ||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacac 18513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 31243474 - 31243564
Alignment:
Q  281 aactatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacgcgtcagtatccgacaccgacactaacacgacacctatg 370  Q
    ||||||||| ||||||||||| ||| |||||  ||||||| |||||| |||||| || || ||||||||| ||||  ||| ||||||||||    
T  31243474 aactatgaaccacaaacactcctcatattaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacaccgacatgacacctatg 31243564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 34306744 - 34306816
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtc-ctgtgtcggacacgcgtcagtatccgacaccgacact 355  Q
    ||||||||||| |||| || ||||||||| |||||| | |||||||||||| ||| || |||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacact 34306816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 16184950 - 16184879
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgt-cctgtgtcggacacgcgtcagtatccgacaccgacac 354  Q
    ||||||||||||||||||| || |||||| ||||| || |||||||||| || || |||| ||||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtcccagtgtcggacaggcatc-gtatgcgacaccgacac 16184879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 24343632 - 24343560
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcctg-tgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||||||||  |||||| ||||| ||| ||||||| | ||||||||||||||| || || |||||||||||    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacac 24343560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 46715416 - 46715484
Alignment:
Q  286 tgaagcacaaacactcttcagattagacgtgt-cctgtgtcggacacgcgtcagtatccgacaccgaca 353  Q
    |||||||| ||||||| || |||||||| ||| || |||||||||||||| |||| |||||||| ||||    
T  46715416 tgaagcacgaacactcctcggattagacatgtgccggtgtcggacacgcggcagtgtccgacacagaca 46715484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 53381530 - 53381602
Alignment:
Q  283 ctatgaagcacaaacactcttcagattagacgtgtcctg-tgtcggacacgcgtcagtatccgacaccgacac 354  Q
    |||||||||||  |||||| || ||||||  |||||| | ||||||| |||||||||| ||||||||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacac 53381602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 225199 - 225279
Alignment:
Q  285 atgaagcacaaacactcttcagattagacgtgtcctg-tgtcggacacgcgtcagtatccgacaccgacactaacacgacac 365  Q
    |||||||||  |||||| ||  ||||| ||||||||| ||||| |||||||||||| ||||||| |||||| ||||||||||    
T  225199 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcgaacacgcgtcagtgtccgaca-cgacaccaacacgacac 225279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 135261 - 135313
Alignment:
Q  281 aactatgaagcacaaacactcttcagattagacgtgtcct-gtgtcggacacg 332  Q
    ||||||||||||| ||||| | ||||||||| |||||||| ||||||||||||    
T  135261 aactatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacacg 135313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University