View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_low_42 (Length: 376)
Name: NF3892_low_42
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_42 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 1606126 - 1606474
Alignment:
| Q |
10 |
ataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
1606126 |
ataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagtt |
1606225 |
T |
|
| Q |
110 |
ttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgac |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1606226 |
ttcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgac |
1606325 |
T |
|
| Q |
210 |
aattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606326 |
aattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtt |
1606425 |
T |
|
| Q |
310 |
acaattttggaaaaccactgcggcattgccaaagatgaagtctacggtg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1606426 |
acaattttggaaaaccactgcggcattgccaaagatgaagtctacggtg |
1606474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 1629424 - 1629772
Alignment:
| Q |
10 |
ataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
1629424 |
ataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagtt |
1629523 |
T |
|
| Q |
110 |
ttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgac |
209 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
1629524 |
ttcatcaccattactcttgaatattgttgccaaggtctgcccaagaaggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgac |
1629623 |
T |
|
| Q |
210 |
aattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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|
| T |
1629624 |
aattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgtt |
1629723 |
T |
|
| Q |
310 |
acaattttggaaaaccactgcggcattgccaaagatgaagtctacggtg |
358 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
1629724 |
acaattttggaataccactgcggcgttgccaaagatgaagtctacggtg |
1629772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 10821274 - 10820926
Alignment:
| Q |
10 |
ataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
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|
| T |
10821274 |
ataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagtt |
10821175 |
T |
|
| Q |
110 |
ttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgac |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
10821174 |
ttcatcaccataactcttgaatattgttgccaaggtcttcctaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgac |
10821075 |
T |
|
| Q |
210 |
aattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
10821074 |
aattgtggaatgaaattccagtgttttggaatggatcacctcgaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgtt |
10820975 |
T |
|
| Q |
310 |
acaattttggaaaaccactgcggcattgccaaagatgaagtctacggtg |
358 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||||||| |
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|
| T |
10820974 |
gcaattttggaataccactgcagcgttgccaaagatgaagtctacggtg |
10820926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 1623255 - 1623596
Alignment:
| Q |
17 |
tcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatca |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1623255 |
tcatactctccataatacaatgtatcttgagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatca |
1623354 |
T |
|
| Q |
117 |
ccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtg |
216 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1623355 |
ccataactcttgagaattgttgccaaggccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtg |
1623454 |
T |
|
| Q |
217 |
gaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |
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|
| T |
1623455 |
gaatgaaattccagtgttttggaatgggtcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttt |
1623554 |
T |
|
| Q |
317 |
tggaaaaccactgcggcattgccaaagatgaagtctacggtg |
358 |
Q |
| |
|
||||| || ||||| || |||||||||||||||||||||||| |
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|
| T |
1623555 |
tggaatactactgcagcgttgccaaagatgaagtctacggtg |
1623596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 18780942 - 18781290
Alignment:
| Q |
10 |
ataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagtt |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
18780942 |
ataattctcatactcgccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagtt |
18781041 |
T |
|
| Q |
110 |
ttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgac |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
18781042 |
ttcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgac |
18781141 |
T |
|
| Q |
210 |
aattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
18781142 |
aattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgtt |
18781241 |
T |
|
| Q |
310 |
acaattttggaaaaccactgcggcattgccaaagatgaagtctacggtg |
358 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
18781242 |
acaattttggaacactactgcggcgttgccaaagataaagtcgacggtg |
18781290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 358
Target Start/End: Original strand, 12802541 - 12802856
Alignment:
| Q |
43 |
ttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactctcgaatattgttgccaa |
142 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| | || || || ||| | |||||||| | |||||| |||| |||||| || ||| |||||| |
|
|
| T |
12802541 |
ttgagcaaaattagtacctccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccag |
12802640 |
T |
|
| Q |
143 |
ggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatg |
242 |
Q |
| |
|
|||| ||||||||||| ||| | || | ||||| ||||| | ||| | || |||||||| ||| | ||||| | ||||||||||||||||| |||| |
|
|
| T |
12802641 |
ggccggcccaagaaggtgttgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatg |
12802740 |
T |
|
| Q |
243 |
ggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaa |
342 |
Q |
| |
|
||||| | ||||||||||| ||||||||||| ||||| || | |||||| |||| | | ||| | || ||||||||||| || || || |||||||| |
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|
| T |
12802741 |
ggtcatcacgaccttgggccgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttggaaaactacggctgcgttgccaaa |
12802840 |
T |
|
| Q |
343 |
gatgaagtctacggtg |
358 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
12802841 |
gatgaagtcaacggtg |
12802856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 8767130 - 8767075
Alignment:
| Q |
293 |
tttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaa |
348 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaa |
8767075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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