View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_45 (Length: 361)

Name: NF3892_low_45
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_45
NF3892_low_45
[»] chr3 (31 HSPs)
chr3 (9-343)||(22431316-22431650)
chr3 (9-330)||(22368070-22368398)
chr3 (128-343)||(22468231-22468447)
chr3 (128-343)||(22630722-22630938)
chr3 (152-343)||(22443046-22443238)
chr3 (203-343)||(22632223-22632364)
chr3 (128-343)||(22358285-22358501)
chr3 (146-343)||(22179384-22179582)
chr3 (143-343)||(22052700-22052901)
chr3 (127-343)||(22635785-22636002)
chr3 (144-343)||(22115052-22115252)
chr3 (128-343)||(22436917-22437133)
chr3 (137-340)||(22458781-22458985)
chr3 (137-340)||(22481762-22481966)
chr3 (143-312)||(21945622-21945792)
chr3 (146-343)||(22027967-22028165)
chr3 (9-89)||(22630581-22630662)
chr3 (9-89)||(22353954-22354034)
chr3 (9-89)||(22358145-22358225)
chr3 (9-89)||(22442882-22442962)
chr3 (205-343)||(21930388-21930527)
chr3 (128-271)||(22354094-22354240)
chr3 (143-253)||(21937211-21937321)
chr3 (146-343)||(22186955-22187153)
chr3 (146-341)||(22034486-22034682)
chr3 (9-85)||(22468091-22468167)
chr3 (9-89)||(22635646-22635726)
chr3 (146-315)||(30989606-30989776)
chr3 (147-336)||(22615561-22615751)
chr3 (9-89)||(22115328-22115408)
chr3 (154-186)||(22208145-22208177)
[»] chr4 (1 HSPs)
chr4 (137-327)||(29610863-29611039)
[»] chr8 (1 HSPs)
chr8 (152-253)||(27294606-27294707)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 22431316 - 22431650
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttgaggaggaggatcgacttcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431316 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttgaggaggaggatcgacttcaa 22431415  T
Q  109 acttgtgcaacattttctgcaacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431416 acttgtgcaacattttctgcaacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtc 22431515  T
Q  209 aaaaactttcttggttagagtggtttttcccagtcctcccattccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaata 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22431516 aaaaactttcttggttagagtggtttttcccagtcctcccattccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaata 22431615  T
Q  309 tgtctcttggctcttcaaatcccacaacatcagct 343  Q
    |||||||||||||||||||||||||||||||||||    
T  22431616 tgtctcttggctcttcaaatcccacaacatcagct 22431650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 22368070 - 22368398
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttgaggagga------ggatcga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||| |||||||||| || ||      |||  ||    
T  22368070 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag-ga 22368168  T
Q  103 cttcaaacttgt-gcaacattttctgcaacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgt 201  Q
    | |    ||||| |||  || | || || |||||||||| ||| ||||||| |||| || ||||||||||||||||||||||||||||||| |||| | |    
T  22368169 catttcccttgttgcagtatgtccttcagcaatttttctttattatatggtcgagaaaccgtgatccataaacgacaatcaaagtgtttaacgacctttt 22368268  T
Q  202 tgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatc 300  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| | | | || |||| | ||||| | ||||    
T  22368269 ggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcggtgtgctcttccctctaccaacaaatc 22368368  T
Q  301 aatcaatatgtctcttggctcttcaaatcc 330  Q
    ||||||| ||||||||| | | ||||||||    
T  22368369 aatcaatttgtctcttgacacatcaaatcc 22368398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 343
Target Start/End: Original strand, 22468231 - 22468447
Alignment:
Q  128 caacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttaga 227  Q
    |||||||||||||||||  |||||| ||||||| |||||||||| | |||||||||| ||||||| |||| | | |||||||||||||||||||| || |    
T  22468231 caacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggctata 22468330  T
Q  228 gtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaa 326  Q
    |||||||||||||||||||||||||| || |||||||| || ||| ||||| || |||| | ||||| | ||||||||||| |||||| |||||||||||    
T  22468331 gtggtttttcccagtcctcccattccaactatggagacaacggtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcgtggctcttcaa 22468430  T
Q  327 atcccacaacatcagct 343  Q
    ||||||||| |||||||    
T  22468431 atcccacaagatcagct 22468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 128 - 343
Target Start/End: Original strand, 22630722 - 22630938
Alignment:
Q  128 caacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttaga 227  Q
    ||||||| |||||||||  |||||| ||||||| |||||||||  | |||||||||||||||||| |||| |   ||||||||||| ||||||||  |||    
T  22630722 caacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaattttcttggcaaga 22630821  T
Q  228 gtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaa 326  Q
    |||||||| ||||||||||||||||| ||||| ||||| |||||| | ||| || |||| | || |||||||||||||||| |||||| |||||| ||||    
T  22630822 gtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtctcgtggctcgtcaa 22630921  T
Q  327 atcccacaacatcagct 343  Q
    | |||||||||||||||    
T  22630922 agcccacaacatcagct 22630938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 152 - 343
Target Start/End: Original strand, 22443046 - 22443238
Alignment:
Q  152 ttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccatt 251  Q
    |||||||||  ||||||||||| |||| |||||||| ||||  ||| | | ||||||||||| ||   ||| ||||||||||||||||| ||||||||||    
T  22443046 ttgagacaccatgatccataaaagacagtcaaagtgcttaactaccttttggttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccatt 22443145  T
Q  252 cca-caatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagct 343  Q
    ||| |||||||||| |||||| | |||||| |||| | ||||| | ||||||||||| ||||||||||||||||||| || |||| |||||||    
T  22443146 ccaacaatggagacaactgtgcggtcttctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaagccaacaatatcagct 22443238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 22632223 - 22632364
Alignment:
Q  203 gttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatca 301  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| |||||| | ||| || |||| | ||||||||||| |    
T  22632223 gttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctcttccctctaccagccaatta 22632322  T
Q  302 atcaatatgtctcttggctcttcaaatcccacaacatcagct 343  Q
    || | | | ||| |||||||||||||||||||||||||||||    
T  22632323 attagtttctctattggctcttcaaatcccacaacatcagct 22632364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 128 - 343
Target Start/End: Original strand, 22358285 - 22358501
Alignment:
Q  128 caacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttaga 227  Q
    ||||| ||||||| |||  |||||| ||||||| || ||||||| ||||| |||||||||||| | |||| |   |||||||||||||||||| | ||||    
T  22358285 caacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctaga 22358384  T
Q  228 gtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaa 326  Q
    |||||||||||||||||||||||||| ||||||||||| | |||  | ||| || ||||   |||||   ||||||||||| ||||||||| ||  ||||    
T  22358385 gtggtttttcccagtcctcccattccaacaatggagacaattgtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttgtcttatcaa 22358484  T
Q  327 atcccacaacatcagct 343  Q
    |||| ||||||||||||    
T  22358485 atcctacaacatcagct 22358501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 343
Target Start/End: Complemental strand, 22179582 - 22179384
Alignment:
Q  146 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 245  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||  || ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22179582 atatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22179483  T
Q  246 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagct 343  Q
    |||||||| || | | | ||||| ||| ||||||   |||| | ||||| ||||||||||||| | | ||||||| |||||||||||||||| ||||||    
T  22179482 cccattcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaatcaatctttttcttggcgcttcaaatcccacaacctcagct 22179384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 143 - 343
Target Start/End: Complemental strand, 22052901 - 22052700
Alignment:
Q  143 atcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagt 242  Q
    |||||||| |||||||||||| |||||||  ||||||||||| |||  || ||     ||| |||||||||||||||||| |||||| ||||||||  |     
T  22052901 atcatatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgc 22052802  T
Q  243 cctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcag 341  Q
    ||||||||||| || |  || ||||| ||| |||||||  |||| ||||||| ||||||||||||| | | ||||||  |||||||||||||||| ||||    
T  22052801 cctcccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatctttttcttggtacttcaaatcccacaacctcag 22052702  T
Q  342 ct 343  Q
    ||    
T  22052701 ct 22052700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 127 - 343
Target Start/End: Original strand, 22635785 - 22636002
Alignment:
Q  127 gcaacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttag 226  Q
    |||||| ||||||| |||  |||||| ||||||| || ||||||| |||||||||||||| ||| | |||| |   |||||||||||||||||| | |||    
T  22635785 gcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacaatcaaagtattttacgacctttgggttgtcaaaaactttcttcgctag 22635884  T
Q  227 agtggtttttcccagtcctcccattccaca-atggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttca 325  Q
    ||||||||||||  |||||||||||||| | |||||||| | |||  | ||| || ||||   |||||    ||||||||||  |||||||||||  |||    
T  22635885 agtggtttttccttgtcctcccattccaaagatggagacaattgtccggtctgctcttcccgctaccaaaagatcaatcaattcgtctcttggcttatca 22635984  T
Q  326 aatcccacaacatcagct 343  Q
    ||||| ||||||||||||    
T  22635985 aatcctacaacatcagct 22636002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 22115252 - 22115052
Alignment:
Q  144 tcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtc 243  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||  || ||     ||| |||||||||||||||| | |||||||||||||||  | |    
T  22115252 tcatatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgcc 22115153  T
Q  244 ctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagc 342  Q
    |||||||||| || |  || |  || ||| |||||||  |||| | ||||| ||||||||||||| | | ||||||  |||||||||||||||| |||||    
T  22115152 ctcccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagc 22115053  T
Q  343 t 343  Q
    |    
T  22115052 t 22115052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 343
Target Start/End: Original strand, 22436917 - 22437133
Alignment:
Q  128 caacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttaga 227  Q
    ||||||||||||| ||   |||| |||||||||||||||||||| | |||| ||||| ||||| | |||  || |||| ||||||||||||||||  |||    
T  22436917 caacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaactttcttggccaga 22437016  T
Q  228 gtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaa 326  Q
    || ||||||||  | ||||||||||| ||||| ||||| ||||   ||||| || ||||  | |||||||||| || |||||||  | | ||||||||||    
T  22437017 gtagtttttccttgccctcccattcctacaatagagacaactgcacgctctactcttcccctcaccagccaattaaacaatatgcgtttgggctcttcaa 22437116  T
Q  327 atcccacaacatcagct 343  Q
    | ||||| |||||||||    
T  22437117 agcccacgacatcagct 22437133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 340
Target Start/End: Original strand, 22458781 - 22458985
Alignment:
Q  137 ttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggttttt 236  Q
    ||||||||  |||| |||||||||| ||||||||| | |||||||||||||||||| || | |||||| ||||||||| ||||| |  ||||| ||||||    
T  22458781 ttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgttttt 22458880  T
Q  237 cccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaa 335  Q
    ||  |||||||| |||| ||||||| ||| | |||| || ||||| |  | | || || ||||||||| | ||||||||||||  ||||||| || ||||    
T  22458881 ccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaa 22458980  T
Q  336 catca 340  Q
    |||||    
T  22458981 catca 22458985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 340
Target Start/End: Original strand, 22481762 - 22481966
Alignment:
Q  137 ttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggttttt 236  Q
    ||||||||  |||| |||||||||| ||||||||| | |||||||||||||||||| || | |||||| ||||||||| ||||| |  ||||| ||||||    
T  22481762 ttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgttttt 22481861  T
Q  237 cccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaa 335  Q
    ||  |||||||| |||| ||||||| ||| | |||| || ||||| |  | | || || ||||||||| | ||||||||||||  ||||||| || ||||    
T  22481862 ccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaa 22481961  T
Q  336 catca 340  Q
    |||||    
T  22481962 catca 22481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 312
Target Start/End: Complemental strand, 21945792 - 21945622
Alignment:
Q  143 atcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagt 242  Q
    |||||||| ||||||||| |||||||||| | ||||||||||||||  || |||    ||| |||||||||||||||||| |||||||||||||||  |     
T  21945792 atcatatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgc 21945693  T
Q  243 cctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtc 312  Q
    ||||||||||| || | ||| || || ||| |||| ||  |||| ||||||| |||||||||||| |||||    
T  21945692 cctcccattcctaccacggaaactacagtgcgctcctcccttccctttaccatccaatcaatcaacatgtc 21945622  T

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Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 343
Target Start/End: Complemental strand, 22028165 - 22027967
Alignment:
Q  146 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 245  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||   | ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22028165 atatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22028066  T
Q  246 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagct 343  Q
    |||||||| || |  || ||||| ||| |||||||  |||| | ||||| ||||||| ||||| | | ||||||| |||||||||||||||| ||||||    
T  22028065 cccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagtcaatctttttcttggcgcttcaaatcccacaacctcagct 22027967  T

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Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 22630581 - 22630662
Alignment:
Q  9 acatcatcaaacactacaa-cgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 89  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||   |||||||||||||||    
T  22630581 acatcatcaaacactacaaacgtacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatttga 22630662  T

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Target: chr3; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 22353954 - 22354034
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 89  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||   |||||||||||||||    
T  22353954 acattatcaaacactacaacgtacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttga 22354034  T

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Target: chr3; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 22358145 - 22358225
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 89  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||| |||| | | |||||||||||||    
T  22358145 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttga 22358225  T

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Target: chr3; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 22442882 - 22442962
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 89  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||| |||| | | |||||||||||||    
T  22442882 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttga 22442962  T

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Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 343
Target Start/End: Complemental strand, 21930527 - 21930388
Alignment:
Q  205 tgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaat 303  Q
    |||||||||||||||||| |||||| ||||||||  | ||||||||||| || |  || ||||| ||| |||||||  |||| | ||||| |||||||||    
T  21930527 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaat 21930428  T
Q  304 caatatgtctcttggctcttcaaatcccacaacatcagct 343  Q
    |||||| | ||||||  |||||||||||||||| ||||||    
T  21930427 caatatttttcttggtgcttcaaatcccacaacctcagct 21930388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 271
Target Start/End: Original strand, 22354094 - 22354240
Alignment:
Q  128 caacaatttttctatatcatatggttgagacactgtgatccataaacg--acaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggtta 225  Q
    ||||| ||||||||| |  |||||| |||| || |||||||||| ||   |||||||||||  ||||  ||| | | |||||||||||||||  ||| ||    
T  22354094 caacactttttctatgttgtatggtcgagataccgtgatccatatacataacaatcaaagttcttaactaccttttggttgtcaaaaacttttctggcta 22354193  T
Q  226 gagtggtttttcccagtcctcccattcc-acaatggagaccactgtg 271  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  22354194 gagtggtttttcccagtcctcccattccaacaatggagacaactgtg 22354240  T

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Target: chr3; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 21937321 - 21937211
Alignment:
Q  143 atcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagt 242  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||  || |||    ||| |||||||| ||||||| | |||||||||||||||  |     
T  21937321 atcatatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgc 21937222  T
Q  243 cctcccattcc 253  Q
    |||||||||||    
T  21937221 cctcccattcc 21937211  T

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Target: chr3; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 343
Target Start/End: Complemental strand, 22187153 - 22186955
Alignment:
Q  146 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 245  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||   | ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22187153 atatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22187054  T
Q  246 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagct 343  Q
    |||||||| || |  || |  || ||| |||||||  |||| ||||||| ||| ||||||||| | | ||||||| |||||||||||||||| ||||||    
T  22187053 cccattcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaatcaatctttttcttggcgcttcaaatcccacaacctcagct 22186955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 341
Target Start/End: Complemental strand, 22034682 - 22034486
Alignment:
Q  146 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 245  Q
    ||||| |||||||||||| ||||||| |||| |||||||||||   | ||     ||| |||||||||||||||||| |||||| ||||||||  | |||    
T  22034682 atatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccct 22034583  T
Q  246 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcag 341  Q
    |||||||| || |  || ||||| ||| |||||||  |||| | ||||| ||||||||||||| | | ||||||  |||||||||||||||| ||||    
T  22034582 cccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcag 22034486  T

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Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 22468091 - 22468167
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccat 85  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||| ||||   |||||||||||    
T  22468091 acatcatcaaacactataacatacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccat 22468167  T

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Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 22635646 - 22635726
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 89  Q
    |||||||||||||||| ||| |||||||||||||| |||| |||||||| || ||||| |||| | |||||||||||||||    
T  22635646 acatcatcaaacactaaaacatacctttttccttgaaagtggtttctcacttcatcaactaatgactttcgatccatttga 22635726  T

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Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 30989606 - 30989776
Alignment:
Q  146 atatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcct 245  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  || |||  |  ||||||||||||||||||| || ||||||||||| ||  | |||    
T  30989606 atatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccct 30989705  T
Q  246 cccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctct 315  Q
    ||||| || || |  || |  || ||| |||| ||| |||| ||||||| |||||||||||| ||||||||    
T  30989706 cccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaaccaatcaatcaacatgtctct 30989776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 336
Target Start/End: Original strand, 22615561 - 22615751
Alignment:
Q  147 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 246  Q
    |||| |||||||||||||||||||| ||||||||||||||||  |   |||   ||| | |||||||| |||||||  ||||||||||| ||| | ||||    
T  22615561 tatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctc 22615660  T
Q  247 ccatt-ccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaac 336  Q
    ||||| |||| |  ||||| || ||| ||||| || |||| ||||||| |||  | |||||| | ||||| | ||||| ||||||||||||    
T  22615661 ccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttctctagactcttgaaatcccacaac 22615751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 22115408 - 22115328
Alignment:
Q  9 acatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 89  Q
    |||||||||||||| ||||||||||| |||   |||||||| ||||||| || ||||  ||||||   |||||||||||||    
T  22115408 acatcatcaaacacgacaacgtacctctttttctgcaagtattttctcacttcatcagttaataatcctcgatccatttga 22115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 22208177 - 22208145
Alignment:
Q  154 gagacactgtgatccataaacgacaatcaaagt 186  Q
    |||||||||||||||||| ||||||||||||||    
T  22208177 gagacactgtgatccatacacgacaatcaaagt 22208145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 327
Target Start/End: Original strand, 29610863 - 29611039
Alignment:
Q  137 ttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggttttt 236  Q
    ||||||||  |||| ||| || ||||||||||||| ||||   |||||||||| || ||||   |||||||||||||||||||| |||||||| ||||||    
T  29610863 ttctatattgtatgattgtgatactgtgatccatacacgattgtcaaagtgttcaacgacc---ttgttgtcaaaaactttcttagttagagtagttttt 29610959  T
Q  237 cccagtcctcccattccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaa 327  Q
    |||          | |||| | |||||| |||||| ||||| || ||||  |||||||||||||||| ||||| |||||||||||||||||    
T  29610960 ccc----------tgccaccacggagacgactgtgcgctctgctcttcc-cttaccagccaatcaattaatatttctcttggctcttcaaa 29611039  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 27294707 - 27294606
Alignment:
Q  152 ttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccatt 251  Q
    |||||||||||||||||||| |||| | |||| ||||   | |||    ||| |||||||||||||||||  |||||||||||||||  |||||||||||    
T  27294707 ttgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccatt 27294608  T
Q  252 cc 253  Q
    ||    
T  27294607 cc 27294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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