View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_46 (Length: 359)

Name: NF3892_low_46
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_46
NF3892_low_46
[»] chr7 (3 HSPs)
chr7 (9-345)||(44638314-44638654)
chr7 (173-230)||(32295228-32295285)
chr7 (171-204)||(41386825-41386858)
[»] chr6 (2 HSPs)
chr6 (75-133)||(26280553-26280611)
chr6 (164-205)||(33496662-33496703)
[»] chr1 (5 HSPs)
chr1 (164-221)||(7524148-7524205)
chr1 (164-223)||(1514378-1514437)
chr1 (168-202)||(11049289-11049323)
chr1 (177-223)||(32370022-32370068)
chr1 (75-132)||(646128-646185)
[»] chr4 (4 HSPs)
chr4 (170-205)||(42972534-42972569)
chr4 (163-204)||(28009578-28009619)
chr4 (164-204)||(26617503-26617543)
chr4 (164-196)||(30357547-30357579)
[»] chr3 (3 HSPs)
chr3 (168-203)||(4526171-4526206)
chr3 (168-205)||(4401415-4401452)
chr3 (164-221)||(47356238-47356295)
[»] chr5 (3 HSPs)
chr5 (171-205)||(15955364-15955398)
chr5 (168-204)||(370743-370779)
chr5 (164-204)||(15368408-15368448)
[»] chr2 (3 HSPs)
chr2 (171-205)||(31415377-31415411)
chr2 (168-204)||(32596030-32596066)
chr2 (168-204)||(33502276-33502312)
[»] chr8 (5 HSPs)
chr8 (174-231)||(12685941-12685998)
chr8 (171-204)||(32681314-32681347)
chr8 (164-204)||(32927927-32927967)
chr8 (171-231)||(33114796-33114856)
chr8 (178-230)||(38257621-38257673)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 345
Target Start/End: Complemental strand, 44638654 - 44638314
Alignment:
Q  9 agcagagactaagtgtgtggttatttcta----taagtgtaccaaaattgatttcggaggtatatatttatgattatgaaatgtttgattgttttttagt 104  Q
    |||||||| ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44638654 agcagagattaagtgtgtggttatttctacatgtaagtgtaccaaaattgatttcggaggtatatatttatgattatgaaatgtttgattgttttttagt 44638555  T
Q  105 aaaattgattttgcttcaagaatcgattcttgttgaagttatactttatagnnnnnnnaattataaaattgatttttacacacaaatttataattcaact 204  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||    
T  44638554 aaaattgattttgcttcaagaatcgattcttcttgaagttatactttatagtttttttaattaaaaaattgatttttacacacaaatttataattcaact 44638455  T
Q  205 tgtatttacataaatgtatttaaacatcaaatgcaaatcatttcactctcgtcgccgtataattaaacagacacatattaactatgcaacccaagttgaa 304  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  44638454 cgtatttacataaatgtatttaaacatcaaatgcaaatcatttcactctcgtcgccgtataattaaacatacacatactaactatgcaacccaagttgaa 44638355  T
Q  305 cgaacactatattcaaaagcatgcattagagtgtccttggt 345  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  44638354 cgaatactatattcaaaagcatgcattagagtgtccttggt 44638314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 32295228 - 32295285
Alignment:
Q  173 ttgatttttacacacaaatttataattcaacttgtatttacataaatgtatttaaaca 230  Q
    |||||| | |||||||||||||||||||||||    |||||||||||||||| |||||    
T  32295228 ttgattctaacacacaaatttataattcaactcacttttacataaatgtattaaaaca 32295285  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 41386858 - 41386825
Alignment:
Q  171 aattgatttttacacacaaatttataattcaact 204  Q
    ||||||| ||||||||||||||||||||||||||    
T  41386858 aattgatatttacacacaaatttataattcaact 41386825  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 26280553 - 26280611
Alignment:
Q  75 tgattatgaaatgtttgattgttttttagtaaaattgattttgcttcaagaatcgattc 133  Q
    ||||| ||| ||||||||||||||||| ||| |||||||||||| |||||||| |||||    
T  26280553 tgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattc 26280611  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 33496662 - 33496703
Alignment:
Q  164 attataaaattgatttttacacacaaatttataattcaactt 205  Q
    |||||| |||| ||||||||| ||||||||||||||||||||    
T  33496662 attatagaatttatttttacatacaaatttataattcaactt 33496703  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 7524148 - 7524205
Alignment:
Q  164 attataaaattgatttttacacacaaatttataattcaacttgtatttacataaatgt 221  Q
    |||||| |||||||||||||||||||||||||| |||||||    |||||||||||||    
T  7524148 attatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgt 7524205  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 1514378 - 1514437
Alignment:
Q  164 attataaaattgatttttacacacaaatttataattcaacttgtatttacataaatgtat 223  Q
    |||||| |||||||||||||||||||||||||  |||||||  | ||||||| |||||||    
T  1514378 attatataattgatttttacacacaaatttattgttcaactcatttttacatgaatgtat 1514437  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 11049289 - 11049323
Alignment:
Q  168 taaaattgatttttacacacaaatttataattcaa 202  Q
    ||||||||||||||||||||||||||||| |||||    
T  11049289 taaaattgatttttacacacaaatttatagttcaa 11049323  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 32370068 - 32370022
Alignment:
Q  177 tttttacacacaaatttataattcaacttgtatttacataaatgtat 223  Q
    ||||||||||||||||||||||| ||||||  ||||||| |||||||    
T  32370068 tttttacacacaaatttataattgaacttgcttttacatgaatgtat 32370022  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 646128 - 646185
Alignment:
Q  75 tgattatgaaatgtttgattgttttttagtaaaattgattttgcttcaagaatcgatt 132  Q
    ||||||||| ||||||| |||||||| |||| |||||||||||| || ||||| ||||    
T  646128 tgattatgacatgtttggttgtttttgagtagaattgattttgcctccagaattgatt 646185  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 42972534 - 42972569
Alignment:
Q  170 aaattgatttttacacacaaatttataattcaactt 205  Q
    |||||||||||| |||||||||||||||||||||||    
T  42972534 aaattgattttttcacacaaatttataattcaactt 42972569  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 28009619 - 28009578
Alignment:
Q  163 aattataaaattgatttttacacacaaatttataattcaact 204  Q
    |||| ||||||||||| ||||| |||||||||||||||||||    
T  28009619 aattctaaaattgattattacaaacaaatttataattcaact 28009578  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 26617503 - 26617543
Alignment:
Q  164 attataaaattgatttttacacacaaatttataattcaact 204  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  26617503 attataaaattgatttttatagataaatttataattcaact 26617543  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 30357547 - 30357579
Alignment:
Q  164 attataaaattgatttttacacacaaatttata 196  Q
    |||||| ||||||||||||||||||||||||||    
T  30357547 attatataattgatttttacacacaaatttata 30357579  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 4526171 - 4526206
Alignment:
Q  168 taaaattgatttttacacacaaatttataattcaac 203  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4526171 taaaattgatttttacacacaaatttatagttcaac 4526206  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 4401452 - 4401415
Alignment:
Q  168 taaaattgatttttacacacaaatttataattcaactt 205  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  4401452 taaagttgatttttacacaccaatttataattcaactt 4401415  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 47356295 - 47356238
Alignment:
Q  164 attataaaattgatttttacacacaaatttataattcaacttgtatttacataaatgt 221  Q
    |||||| |||||||||||||||| ||||||| | ||||| |||| ||||||| |||||    
T  47356295 attatagaattgatttttacacataaatttaaagttcaaattgtttttacatgaatgt 47356238  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 15955398 - 15955364
Alignment:
Q  171 aattgatttttacacacaaatttataattcaactt 205  Q
    ||||||||||||||||||||||||||||| |||||    
T  15955398 aattgatttttacacacaaatttataatttaactt 15955364  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 370779 - 370743
Alignment:
Q  168 taaaattgatttttacacacaaatttataattcaact 204  Q
    |||||||||||| |||||||||||||||| |||||||    
T  370779 taaaattgatttgtacacacaaatttatacttcaact 370743  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 15368408 - 15368448
Alignment:
Q  164 attataaaattgatttttacacacaaatttataattcaact 204  Q
    |||||| |||||||| | |||||||||||||||||||||||    
T  15368408 attatagaattgattctaacacacaaatttataattcaact 15368448  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 31415377 - 31415411
Alignment:
Q  171 aattgatttttacacacaaatttataattcaactt 205  Q
    |||||||| ||||||||||||||||||||||||||    
T  31415377 aattgattcttacacacaaatttataattcaactt 31415411  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 32596030 - 32596066
Alignment:
Q  168 taaaattgatttttacacacaaatttataattcaact 204  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  32596030 taaaattgatttttacatacaaattcataattcaact 32596066  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 33502276 - 33502312
Alignment:
Q  168 taaaattgatttttacacacaaatttataattcaact 204  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  33502276 taaaattgatttttacacacatatttatagttcaact 33502312  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 12685941 - 12685998
Alignment:
Q  174 tgatttttacacacaaatttataattcaacttgtatttacataaatgtatttaaacat 231  Q
    ||||||||||| |||||||||||| |||||||  |||||||| ||| |||| ||||||    
T  12685941 tgatttttacatacaaatttataactcaacttccatttacatgaatatattcaaacat 12685998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 32681347 - 32681314
Alignment:
Q  171 aattgatttttacacacaaatttataattcaact 204  Q
    |||||||||||| |||||||||||||||||||||    
T  32681347 aattgatttttaaacacaaatttataattcaact 32681314  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 32927927 - 32927967
Alignment:
Q  164 attataaaattgatttttacacacaaatttataattcaact 204  Q
    |||||| |||| ||||||||||||||||||||| |||||||    
T  32927927 attatagaattcatttttacacacaaatttatagttcaact 32927967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 33114796 - 33114856
Alignment:
Q  171 aattgatttttacacacaaatttataattcaacttgtatttacataaatgtatttaaacat 231  Q
    ||||||||  |||||||||||||||| |||||||| ||||||  | ||||||| |||||||    
T  33114796 aattgattcgtacacacaaatttatagttcaacttatatttatgtcaatgtatctaaacat 33114856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 38257621 - 38257673
Alignment:
Q  178 ttttacacacaaatttataattcaacttgtatttacataaatgtatttaaaca 230  Q
    ||||| |||||||||||||||||||||  | |||||||||||| || ||||||    
T  38257621 ttttatacacaaatttataattcaactcatttttacataaatgcatctaaaca 38257673  T

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