View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_49 (Length: 352)
Name: NF3892_low_49
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 31024263 - 31023927
Alignment:
| Q |
16 |
catcattccttaaacatttctatcatcattccttaaacgttatgacacttacttgcataagtaaacaaatatttgtgaggcgaatattatgatacatacc |
115 |
Q |
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| T |
31024263 |
catcattccttaaacatttctatcatcattccttaaacgttatgacacttacttgcataagtaaacaaatatttgtgaggcgaatattatgatacatacc |
31024164 |
T |
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| Q |
116 |
caagtttgaaatagatatccattgaaatgt-ccccaagcatagtttgacattaggggggacataaatcttactaagtgaaataaaaaagaagat--nnnn |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31024163 |
caagtttgaaatagatatccattgaaatgtcccccaagcatagtttgacattaggggggacataaatcttactaagtgaaataaaaaagaagataaaaaa |
31024064 |
T |
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| Q |
213 |
nnnntcctcacacaaggatgtcatttttgtattctcgaatataatctttctctgtcacttcaccactctaaacgccaacaatacacatatcataaaatgt |
312 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31024063 |
ataatcctcacacaaggatgttatttttgtattctcgaatataatctttctctatcacttcatcactctaaacgccaacaatacacatatcataaaatgt |
31023964 |
T |
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| Q |
313 |
attaccattctcatcctctatcggtttcttggcgtct |
349 |
Q |
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||||||||||| ||||||||||||||| |||| |||| |
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| T |
31023963 |
attaccattctgatcctctatcggttttttggtgtct |
31023927 |
T |
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