View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_54 (Length: 347)
Name: NF3892_low_54
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 10548005 - 10547658
Alignment:
| Q |
1 |
cataggataggaaaagtaatagtcaaacggttttagtcgg-catcaaacttggatgctcaaaatcaatgacagtcttggcccaaacactttatactttat |
99 |
Q |
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| T |
10548005 |
catagaataggaaaagtaatagtcaaactgttttagtcgggcatcaaacttggatgctcaaaatcaatgacagtcttggcccaaacactttatactttgt |
10547906 |
T |
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| Q |
100 |
taaacacacatgtaagttccttcnnnnnnnattgacaacatgtaggttcaattcaaagtgtacaataaacgtgttttgttttaaaagaaaagtacaataa |
199 |
Q |
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| T |
10547905 |
taaacacacatgtaggttcttttttttttt-ttgacaacatgtaggttcaattcaaagtgtacaataaacgtgttttgttttaaaagaaaagtacaataa |
10547807 |
T |
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| Q |
200 |
acggttggcagttacaattgagtacgatgagtagcatatttattttgatgaaaacc------aatatatatat------acacacacc-tccaatgaatt |
286 |
Q |
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| T |
10547806 |
acggttggcagttacaattcagtacgatgagtagcatatttattttgatgaaaaccacatataatatatatatatagacacacacaccttccaatgaatt |
10547707 |
T |
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| Q |
287 |
atgttgtt----tataagtgtaactcaccgacaaaatgactagtaatac |
331 |
Q |
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| T |
10547706 |
atgttgtttatatataagtgtaactcaccgacaaaatgactagtaatac |
10547658 |
T |
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