View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_55 (Length: 346)

Name: NF3892_low_55
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_55
NF3892_low_55
[»] chr3 (5 HSPs)
chr3 (14-330)||(28828664-28828980)
chr3 (70-190)||(28838018-28838134)
chr3 (285-330)||(28842837-28842882)
chr3 (53-84)||(47132064-47132095)
chr3 (51-80)||(50211803-50211832)
[»] chr6 (2 HSPs)
chr6 (53-88)||(2455330-2455365)
chr6 (53-91)||(9559500-9559538)
[»] scaffold0050 (1 HSPs)
scaffold0050 (56-87)||(69742-69773)
[»] chr8 (1 HSPs)
chr8 (53-88)||(27412847-27412882)
[»] chr4 (3 HSPs)
chr4 (53-88)||(52428735-52428770)
chr4 (51-88)||(4304114-4304151)
chr4 (53-86)||(37863921-37863954)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 28828980 - 28828664
Alignment:
Q  14 gaaccgatgaaaataaactaaaaatagtttatagacattataagttgttttcataagttctctcaaatagtttcaaaagcacttttgtccatatataact 113  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  28828980 gaaccgatgaaaataagctaaaaatagtttatagacattataagttgttttcataagttctctcaaatagtttcaaaagcacttttgtcggtatataact 28828881  T
Q  114 caaataaaataagtcaatccagacaactttaactactaaagnnnnnnnctaaaagaactcgaaaacatccaatcaattcccataactgtagtttagttcc 213  Q
    |||||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28828880 caaataaaataagtcaatccagacaactttaacttctaaagaaaaaaactaaaagaactcgaaaacatccaatcaatttccataactgtagtttagttcc 28828781  T
Q  214 aaaacttccaatttcaaaacatattgtcggtgatatgtatgtatactaaagctctaacttgaataatgaagttttgctggtttcagacttatattgagac 313  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28828780 aaaacttccaatttcaaaacatattgtccgtgatatgtatgtatgctaaagctctaacttgaataatgaagttttgctggtttcagacttatattgagac 28828681  T
Q  314 agttggtcacaaattta 330  Q
    |||||||||||||||||    
T  28828680 agttggtcacaaattta 28828664  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 28838134 - 28838018
Alignment:
Q  70 gttctctcaaatagtttcaaaagcacttttgtccatatataactcaaataaaataagtcaatccagacaactttaactactaaagnnnnnnnctaaaaga 169  Q
    ||||||||| ||||||||||||||||||||||| |||||||    || | ||||||||||||||| ||||||||||||  |||||       ||||||||    
T  28838134 gttctctcacatagtttcaaaagcacttttgtcaatatata----aactcaaataagtcaatccaaacaactttaacttttaaagaaaaaagctaaaaga 28838039  T
Q  170 actcgaaaacatccaatcaat 190  Q
    |||| ||||||||||||||||    
T  28838038 actcaaaaacatccaatcaat 28838018  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 28842882 - 28842837
Alignment:
Q  285 ttttgctggtttcagacttatattgagacagttggtcacaaattta 330  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||    
T  28842882 ttttgctggtttcagacttatactgagacagttggtcacaatttta 28842837  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 47132064 - 47132095
Alignment:
Q  53 ataagttgttttcataagttctctcaaatagt 84  Q
    ||||||||||||||||||||||||||||||||    
T  47132064 ataagttgttttcataagttctctcaaatagt 47132095  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 50211803 - 50211832
Alignment:
Q  51 ttataagttgttttcataagttctctcaaa 80  Q
    ||||||||||||||||||||||||||||||    
T  50211803 ttataagttgttttcataagttctctcaaa 50211832  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 2455330 - 2455365
Alignment:
Q  53 ataagttgttttcataagttctctcaaatagtttca 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  2455330 ataagttgttttcataagttctctcaaatagtttca 2455365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 9559538 - 9559500
Alignment:
Q  53 ataagttgttttcataagttctctcaaatagtttcaaaa 91  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  9559538 ataagttgttttcataagttctcccaaatagtctcaaaa 9559500  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 69742 - 69773
Alignment:
Q  56 agttgttttcataagttctctcaaatagtttc 87  Q
    ||||||||||||||||||||||||||||||||    
T  69742 agttgttttcataagttctctcaaatagtttc 69773  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 27412882 - 27412847
Alignment:
Q  53 ataagttgttttcataagttctctcaaatagtttca 88  Q
    |||||||||||||||||| |||||||||||||||||    
T  27412882 ataagttgttttcataagctctctcaaatagtttca 27412847  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 52428735 - 52428770
Alignment:
Q  53 ataagttgttttcataagttctctcaaatagtttca 88  Q
    |||||||||||||||||| |||||||||||||||||    
T  52428735 ataagttgttttcataagctctctcaaatagtttca 52428770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 4304151 - 4304114
Alignment:
Q  51 ttataagttgttttcataagttctctcaaatagtttca 88  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  4304151 ttataaattgttttcataagttctctcaaacagtttca 4304114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 37863954 - 37863921
Alignment:
Q  53 ataagttgttttcataagttctctcaaatagttt 86  Q
    ||||| ||||||||||||||||||||||||||||    
T  37863954 ataagctgttttcataagttctctcaaatagttt 37863921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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