View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_6 (Length: 685)
Name: NF3892_low_6
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 10 - 670
Target Start/End: Original strand, 14219779 - 14220439
Alignment:
| Q |
10 |
ataatactttcataaaagagaatattaggtggaaactgccagcaatgggatgggttcgcctaaatatgaatggagctactagaggtaatagtgtgtccga |
109 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14219779 |
ataatactttcataaaagagaacattaggtgaaaactgccagcaataggatgggttcgcctaaatatgaatggagctactagaggtaatagtgtgtccga |
14219878 |
T |
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| Q |
110 |
ttgtgtaagaattttttgtaatgatagaggtgagtgaatttgtggattttcaaagtgtcagggagtgtgtagtgtgtttgtagtagagttatgtggagnn |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
14219879 |
ttgtgtaagaattttttgtaatgatagaggtgagtgaatttgtggattttcaaagctttagggagtgtgtagtgtgtttgtagcagagttatgtgga-at |
14219977 |
T |
|
| Q |
210 |
nnnnnnnaaaggtttaaagatagctatagagcgtggattttagaaaatggagcttaatttagatttaaaagtagtggtgtctaatcttaagtttgataaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14219978 |
tttttttaaaggtttaaagatagctatagagcgtggattttataaaatggagcttaatttagatttaaaagtagtggtgtctaattttaagtttgataaa |
14220077 |
T |
|
| Q |
310 |
ggtaattgaaatgttcgaatttgtcatacctttaaagaaacgattcttctacgaatgctctagataatcaacgattcttttatgaataatcagctattag |
409 |
Q |
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| T |
14220078 |
gataattgaaatgttcgaatttgtcatacctttaaagaaacgattcttctacgaatgctctagataatcaacgattcttttatggataatcaattattag |
14220177 |
T |
|
| Q |
410 |
gtgaaatttatcatactttgattatctatgaacaacatcatatccagattagttcacatcatttagctgattatgttcatgtgacaacacctcacttaat |
509 |
Q |
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| T |
14220178 |
gtgaaatttgtcataccttgattatctatgaacaacatcatatccagattagttcacatcatttagctgattatgttcatgtgacaacacctcacttaat |
14220277 |
T |
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| Q |
510 |
taactatagtgtattttctttt--gagccctcttctattnnnnnnnntactaataaaaatcttcaatatagccataaatctccacacgtgagcattgcaa |
607 |
Q |
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||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
14220278 |
taactatagtgtattttttttttcgagccctcttctatt-aaagaaatactaataaaaatcttcaatttagacataaatctccacacgtgagcattgcaa |
14220376 |
T |
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| Q |
608 |
agtcacgtggaggagttccctccagtccaccttgaaatcaaaaacaacattgttgtttggttt |
670 |
Q |
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| T |
14220377 |
agtcacgtggaggagttccctccactccaccttgaaatcaaaaacaacattgttgtttggttt |
14220439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 54 - 297
Target Start/End: Complemental strand, 32713517 - 32713278
Alignment:
| Q |
54 |
atgggatgggttcgcctaaatatgaatggagctactagaggtaatagtgtgtccgattgtgtaagaattttttgtaatgatagaggtgagtgaatttgtg |
153 |
Q |
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||||||||| |||| |||||||| |||||| ||||||||||||||| |||| | ||| | | ||||||| ||||||||||||||||||| | ||||| |
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| T |
32713517 |
atgggatggattcggctaaatattggtggagccactagaggtaatagtatgtctggttgcggaggaattttgcgtaatgatagaggtgagtggacttgtg |
32713418 |
T |
|
| Q |
154 |
gattttcaaagtgtcagggagtgtgtagtgtgtttgtagtagagttatgtggagnnnnnnnnnaaaggtttaaagatagctatagagcgtggattttaga |
253 |
Q |
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| T |
32713417 |
gattttcaaagtgtatgggagtgtgtagtatatttgtagcagagttctggagag----ttttcaaaggtttaaagatagctagagagagtggctttcata |
32713322 |
T |
|
| Q |
254 |
aaatggagcttaatttagatttaaaagtagtggtgtctaatctt |
297 |
Q |
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| T |
32713321 |
aattggagcttcatgtagattcaagactagtggtgtctaatctt |
32713278 |
T |
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