View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_60 (Length: 333)

Name: NF3892_low_60
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_60
NF3892_low_60
[»] chr3 (1 HSPs)
chr3 (33-325)||(37545901-37546193)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 33 - 325
Target Start/End: Original strand, 37545901 - 37546193
Alignment:
Q  33 atgataaatataaacataattgcttaagtctatagaaagaagtggagtttacatgagagcaattacaatctagtgaggattcataaaagtgagctctttg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37545901 atgataaatataaacataattgcttaagtctatagaaagaagtggagtttacatgagagcaattacaatctagtgaggattcatagaagtgagctctttg 37546000  T
Q  133 cattcctcgaggctctaaatttctaagacttgactatcacgccttcaagtggtatagtatatgggttgagatcaagagttagcaaccatgttgaaaatgg 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37546001 cattcctcgaggctctaaatttctaagacttgactatcacgccttcaagtggtatagtatatgggttgagatcaagagttagcaaccatgttgaaaatgg 37546100  T
Q  233 attagaaatcgaaaccttggctcaacaaagaaatgatcctttttatagtacaagtttggcacacgttcttgtcatttctttttgtgtcctttg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37546101 attagaaatcgaaaccttggctcaacaaagaaatgatcctttttatagtacaagtttggcacacgttcttgtcatttctttttgtgtcctttg 37546193  T

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