View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_61 (Length: 332)

Name: NF3892_low_61
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_61
NF3892_low_61
[»] chr7 (1 HSPs)
chr7 (1-322)||(31023526-31023849)
[»] chr3 (2 HSPs)
chr3 (219-305)||(35213886-35213972)
chr3 (227-293)||(20402473-20402539)
[»] chr8 (1 HSPs)
chr8 (222-305)||(43396625-43396706)
[»] chr4 (1 HSPs)
chr4 (237-321)||(7449548-7449632)
[»] chr1 (1 HSPs)
chr1 (237-305)||(48038513-48038581)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 31023849 - 31023526
Alignment:
Q  1 cgagaaaacattttaaccaggattgtgacaatggaattactatttcctctgtgcctaagatccttttttacatgcctaaaatcatgttcaaaccgaggaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31023849 cgagaaaacattttaaccaggatagtgacaatggaattactatttcctctatgcctaagatccttttttacatgcctaaaatcatgttcaaaccgaggaa 31023750  T
Q  101 ttttacctcctaatttatctcacactctagtttgtgagttaggactcacttcaaagtcttgcaaac--tgtcattctctttaaacccgctaagttttgat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31023749 ttttacctcctaatttatctcacactctagtttgtgagttaggactcacttcaaagtcttgcaaactgtgtcattctctttaaacccgctaagttttgat 31023650  T
Q  199 ttgggctcctcatatggcataatttttaatgcaacacgtgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttg 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||    
T  31023649 ttgggctcctcatatggcataatttttaatgcaacacatgaaccaccactcctagaatctttatctttgatgatctcatcaaaattaataaattttcttg 31023550  T
Q  299 catttacattagctttttcctttg 322  Q
    ||||||||||||||||||||||||    
T  31023549 catttacattagctttttcctttg 31023526  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 35213972 - 35213886
Alignment:
Q  219 aatttttaatgcaacacgtgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttac 305  Q
    ||||||| ||||||||  |||| ||||||||  | |||||||||||   ||||||||||||| ||| |||||||| |||||||||||    
T  35213972 aattttttatgcaacatttgaaacaccactcctagaatctttatctaaaatgacctcatcaatatttataaatttccttgcatttac 35213886  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 20402539 - 20402473
Alignment:
Q  227 atgcaacacgtgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattt 293  Q
    |||||||||||||||||||| ||  | ||||||||| | | ||||||||| ||| ||||||||||||    
T  20402539 atgcaacacgtgaaccaccagtcctagaatctttatgtataatgacctcaccaatattaataaattt 20402473  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 43396706 - 43396625
Alignment:
Q  222 ttttaatgcaacacgtgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttac 305  Q
    |||||||||||||||| || ||||| ||  | ||| |||||||   ||||||||||||| |||||||||||| | |||||||||    
T  43396706 ttttaatgcaacacgttaatcaccattcctagaatatttatcta--atgacctcatcaatattaataaatttacctgcatttac 43396625  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 7449632 - 7449548
Alignment:
Q  237 tgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttacattagctttttccttt 321  Q
    |||||||||||||  | |||| |||||| | || |||||||||| |||||||||||  ||||||||||  | || ||||||||||    
T  7449632 tgaaccaccactccaagaatcattatctataataacctcatcaatattaataaattaacttgcatttatttaagatttttccttt 7449548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 48038581 - 48038513
Alignment:
Q  237 tgaaccaccactcgcacaatctttatctttgatgacctcatcaaaattaataaattttcttgcatttac 305  Q
    |||||||||||||  | ||||||||| | | ||||||||||||| |||||||| ||| |||| ||||||    
T  48038581 tgaaccaccactcataaaatctttatatataatgacctcatcaacattaataagtttacttgtatttac 48038513  T

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