View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_62 (Length: 326)
Name: NF3892_low_62
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 28609719 - 28609407
Alignment:
| Q |
1 |
atgcgtttccgtggaattccttgatatctggatatgcagagatgggtctttatgatgatgctattgcgctttattttcaaatggtggaagagggtgttga |
100 |
Q |
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| T |
28609719 |
atgcgtttccgtggaattcgttgatatctggatatgcagagatgggtctttatgatgatgctattgcgctttattttcaaatggtggaagagggtgttga |
28609620 |
T |
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| Q |
101 |
accagatattttcacatttcctcgtgttcttaaagtttgtggtggaattgggttggtgggagttggggaagaggtgcatcgtcatgtggtgcgttgtggg |
200 |
Q |
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| T |
28609619 |
accagatattttcacatttcctcgtgttcttaaagtttgtggtggaattgggttggtgggtgttggggaagaggtgcatcgtcatgtggtgcgttgtggg |
28609520 |
T |
|
| Q |
201 |
ttttgggatgacgggtttgtgcttaatgcacttgttgacatgtattctaagtgtggtgacatcgtgaaggcgaggaagatttttaataagatgcatttta |
300 |
Q |
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| T |
28609519 |
ttttgggatgacgggtttgtgcttaatgcacttgttgacatgtattctaagtgtggtgacatcgtgaaggcgaggaagatttttaataagatgcatttta |
28609420 |
T |
|
| Q |
301 |
gagactcggtttc |
313 |
Q |
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| T |
28609419 |
gagactcagtttc |
28609407 |
T |
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