View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_63 (Length: 325)
Name: NF3892_low_63
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 45111065 - 45110769
Alignment:
| Q |
18 |
cagagagtgcatgaatgagtgatttttgtttttcactgatcatttactgatgtatcta-tgtgctagtaatttgaaatcaacggcagttatattaaccac |
116 |
Q |
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| T |
45111065 |
cagagagtgcatgaatgagtgatttttgtttttcactgatcatttactgatgcatctaatgtgcaagtaatttgaaatcaacggcagttatattagccac |
45110966 |
T |
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| Q |
117 |
gtgtcaccaaagacaaaagttaggacacgtgtcatccattctctgttactgattctctgatgccctatgcatgaatgacgagccacggtttcatttgaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45110965 |
gtgtcaccaaagacaaaagttaggacacgtgtcatccattctctgttactgattctctaatgccctatgcatgaatgacgagccacggtttcatttgaca |
45110866 |
T |
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| Q |
217 |
atagaagatgaaactgaaactg------aaacagaaaaagaaaaagagcagtattaattaattttaccatgaatcagtaatttgcaactagtatata |
307 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45110865 |
atagaagatgaaactgaaactgaaactgaaacagaaaaagaaaaagagcagtattaattaattttaccatgaatcagtaatttgcaactagtatata |
45110769 |
T |
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