View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_66 (Length: 323)

Name: NF3892_low_66
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_66
NF3892_low_66
[»] chr1 (3 HSPs)
chr1 (47-317)||(52421230-52421490)
chr1 (13-62)||(52421502-52421551)
chr1 (184-227)||(38877680-38877723)
[»] chr5 (1 HSPs)
chr5 (201-318)||(37124371-37124487)
[»] chr3 (1 HSPs)
chr3 (184-261)||(50621707-50621784)
[»] chr8 (2 HSPs)
chr8 (184-244)||(45512843-45512903)
chr8 (192-242)||(9989310-9989360)
[»] chr7 (1 HSPs)
chr7 (190-243)||(41626853-41626906)
[»] chr6 (3 HSPs)
chr6 (191-232)||(2079220-2079261)
chr6 (206-254)||(20834423-20834471)
chr6 (184-244)||(12134248-12134308)
[»] chr4 (4 HSPs)
chr4 (184-245)||(38904066-38904127)
chr4 (184-232)||(29398706-29398754)
chr4 (184-230)||(40933243-40933289)
chr4 (191-244)||(20105825-20105878)
[»] chr2 (2 HSPs)
chr2 (184-233)||(37393514-37393563)
chr2 (184-230)||(28908489-28908535)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 47 - 317
Target Start/End: Complemental strand, 52421490 - 52421230
Alignment:
Q  47 ttacaacttctagtataattcaacgatggatataactaatattcactacaaagattttttgtaaatggtaaatacttctaaactccaacatataactgta 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  52421490 ttacaacttctagtataattcaacgatggatataactaatattcactacaaagattttttgtaaatggtaaa----------ctccaacatataactgta 52421401  T
Q  147 ttaaatttaaactctacttattttcaccaatctttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactct 246  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421400 ttaaatttaaactctacttattttcaccaatttttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactct 52421301  T
Q  247 acttcatacaatattatccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcat 317  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421300 acttcatacaacattgtccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcat 52421230  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 52421551 - 52421502
Alignment:
Q  13 tattttccttgcgcatattaaacaaaatctgttattacaacttctagtat 62  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52421551 tattttccttgcgcgtattaaacaaaatctgttattacaacttctagtat 52421502  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 38877680 - 38877723
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagtt 227  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  38877680 aacatcctcatctctgctacacttattttattctcgtgttagtt 38877723  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 37124487 - 37124371
Alignment:
Q  201 tacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatattatccgtcttaaagttattcaataaaatttctccttcaac 300  Q
    |||||| ||| |||||||||||| | ||||||  ||||||||||||| |||||| || ||| || |||||| | || | |||| |||||||||||| |||    
T  37124487 tacactgattgtattctcgtgttgggtcttcaccgtccaacactcta-ttcatataacattgtcggtcttacacttgtccaatgaaatttctcctttaac 37124389  T
Q  301 atgagtggtactttcatt 318  Q
     |||||||||||||||||    
T  37124388 ttgagtggtactttcatt 37124371  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 50621707 - 50621784
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatatt 261  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||| | |||  ||||||||  |||| ||||||||    
T  50621707 aacattctcatctccgctacacttattttatcctcgtattagttcttgactgttgaacactctgtttcacacaatatt 50621784  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 45512843 - 45512903
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 244  Q
    ||||||||||||| |||||  ||||||||||| ||||||| |||||||| |||||||||||    
T  45512843 aacattctcatctccgctatgcttattttattttcgtgttggttcttcaatgtccaacact 45512903  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 9989310 - 9989360
Alignment:
Q  192 catcttcgctacacttattttattctcgtgttagttcttcattgtccaaca 242  Q
    ||||||| |||| ||||||||||| || | |||||||||||||||||||||    
T  9989310 catcttcactacgcttattttattttcattttagttcttcattgtccaaca 9989360  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 41626906 - 41626853
Alignment:
Q  190 ctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacac 243  Q
    ||||||| ||||||||| |||||| |||| |||||||||||||||||| |||||    
T  41626906 ctcatctccgctacactaattttactctcatgttagttcttcattgtcaaacac 41626853  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 2079261 - 2079220
Alignment:
Q  191 tcatcttcgctacacttattttattctcgtgttagttcttca 232  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  2079261 tcatctccgctacgcttattttattctcgtgttagttcttca 2079220  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 20834423 - 20834471
Alignment:
Q  206 ttattttattctcgtgttagttcttcattgtccaacactctacttcata 254  Q
    |||||||||||||||||||| |||||||||  |||||||||| ||||||    
T  20834423 ttattttattctcgtgttagatcttcattgctcaacactctatttcata 20834471  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 12134248 - 12134308
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 244  Q
    |||||||||||||  ||||  |||| ||||||||||||||||||||||  || ||||||||    
T  12134248 aacattctcatctctgctatgcttagtttattctcgtgttagttcttcgctgcccaacact 12134308  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 38904066 - 38904127
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactc 245  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||| || | || |||||||||    
T  38904066 aacattctcatctttgctacacttattttattcttgtgttggttttttactgcccaacactc 38904127  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 29398754 - 29398706
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttcttca 232  Q
    ||||| ||||||| ||||||||||||||||||||| |||| ||||||||    
T  29398754 aacatcctcatctccgctacacttattttattctcatgttggttcttca 29398706  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 40933243 - 40933289
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttctt 230  Q
    ||||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  40933243 aacatcctcatctacgctacacttattttactctcgtgttggttctt 40933289  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 20105825 - 20105878
Alignment:
Q  191 tcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 244  Q
    |||||| ||||||| |||| ||||||| |||||||| ||||| |||||||||||    
T  20105825 tcatctccgctacatttatattattcttgtgttagtccttcactgtccaacact 20105878  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 37393514 - 37393563
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttcttcat 233  Q
    ||||| ||| ||||| |||||||||||||||||||||||| |||||||||    
T  37393514 aacatcctcgtcttctctacacttattttattctcgtgtttgttcttcat 37393563  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 28908489 - 28908535
Alignment:
Q  184 aacattctcatcttcgctacacttattttattctcgtgttagttctt 230  Q
    ||||||||||||| |||||||||||||||| ||||||| | ||||||    
T  28908489 aacattctcatctccgctacacttattttactctcgtgctggttctt 28908535  T

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