View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_67 (Length: 322)
Name: NF3892_low_67
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 43109734 - 43109441
Alignment:
| Q |
19 |
ttttcaggtcttgcagttgtggagttggaattccaccaccgtgtctatgtagctagagctgaaaagtcatggaaacaaattgcaagttccctgcagttca |
118 |
Q |
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| T |
43109734 |
ttttcaggtcttgcagctgtggagttggaattccaccaccgtgtctatgtagctagagctgaaaagtcatggaaacaaattgcaagttccctacagttca |
43109635 |
T |
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| Q |
119 |
tattgggttgcaacattgagctcagaatcaaccatgttccatgtactacagattctaagtatgctaggttgaagaggtcatctttcaatttcttcaattg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43109634 |
tattgggttgcaacattgagctcagaatcaaccatgttccatgtactacagattctaagtatgctaggttgaagaggtcatctttcaatttcttcaattg |
43109535 |
T |
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| Q |
219 |
ttcgcgcaggattcttcggaaatcattatcatccgatgaacatggatgtgaatcagactatgctgattgcacttctcaaaagcctatgatgatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43109534 |
ttcgcgcaggattcttcggaaatcattatcatccgatgaacaaggatgtgaatcagactatgctgattgcacttctcaaaagcctatgatgatg |
43109441 |
T |
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