View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_68 (Length: 320)

Name: NF3892_low_68
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_68
NF3892_low_68
[»] scaffold0568 (2 HSPs)
scaffold0568 (114-301)||(2390-2577)
scaffold0568 (114-301)||(8992-9179)
[»] chr4 (1 HSPs)
chr4 (114-301)||(17060414-17060602)
[»] chr1 (2 HSPs)
chr1 (111-301)||(48223871-48224069)
chr1 (13-69)||(48223792-48223847)
[»] chr8 (1 HSPs)
chr8 (201-289)||(36427944-36428032)
[»] chr3 (1 HSPs)
chr3 (163-293)||(49571424-49571555)
[»] chr7 (1 HSPs)
chr7 (239-285)||(36616105-36616151)
[»] chr5 (1 HSPs)
chr5 (163-219)||(5357132-5357188)


Alignment Details
Target: scaffold0568 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 2390 - 2577
Alignment:
Q  114 tgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccag 213  Q
    |||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  2390 tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccag 2489  T
Q  214 cagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgt 301  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||    
T  2490 cagcttctgtggtgcggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttatgcatagggggtcattgttcttgt 2577  T

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Target: scaffold0568; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 8992 - 9179
Alignment:
Q  114 tgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccag 213  Q
    |||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  8992 tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccag 9091  T
Q  214 cagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgt 301  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9092 cagcttctgtggtgcggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttatgcatagggggtcattgttcttgt 9179  T

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Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 17060414 - 17060602
Alignment:
Q  114 tgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagagg-cggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgcca 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||  |||||||||||||||||    
T  17060414 tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttagggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgcca 17060513  T
Q  213 gcagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgt 301  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| ||||| ||||||| ||||||||||||||||||||    
T  17060514 gcagcttctgtggtgcggttcagcacgtgttggtgtggttgggggcttggtttggtgcggtgttatgcatagggggtcattgttcttgt 17060602  T

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Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 111 - 301
Target Start/End: Original strand, 48223871 - 48224069
Alignment:
Q  111 tgttgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgttt-------- 202  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||| ||||||| |||||||||||||||||  |||||||            
T  48223871 tgttgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaagggcggctgctgctatgtgcacctgctgtcagctggtgttttttttgtt 48223970  T
Q  203 gctgctgccagcagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgt 301  Q
    | || || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  48223971 gttgttgtcagcagcttctgtggtgcggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggcgttatgcgtagggggtcattgttcttgt 48224069  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 48223792 - 48223847
Alignment:
Q  13 gagagaatgttgcattcggtagttgtgtttggggtgtttttctggtggactggcttt 69  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  48223792 gagagaatgttgcattttgtagttgtgtttggggtg-ttttctggtggactggcttt 48223847  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 36427944 - 36428032
Alignment:
Q  201 ttgctgctgccagcagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggt 289  Q
    |||||||||||||||||| ||||| ||||| || |  ||  |||||||| ||||| | |||||||||||||| | ||||||||||||||    
T  36427944 ttgctgctgccagcagctgctgtgttgcgggtctgtgtgctttggtgtgtttgggggttgggtttgatgcggtggtatgcgtagggggt 36428032  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 49571424 - 49571555
Alignment:
Q  163 ggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagct-tctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgg 261  Q
    |||||||| |||| | ||| |||||||||||| |||||| || ||||||||||||| ||||||| ||||||| ||  |  ||| |||||  ||| |||||    
T  49571424 ggcggttggtgctatttgctcctgctgtcagttggtgttagcagctgccagcagctatctgtggcgcggttctgcgcggtttgttgtgcaagggggctgg 49571523  T
Q  262 gtttgatgcggcgttatgcgtagggggtcatt 293  Q
     |||||||| ||  ||||||||||||| ||||    
T  49571524 ttttgatgcagctgtatgcgtagggggccatt 49571555  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 36616151 - 36616105
Alignment:
Q  239 gtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagg 285  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  36616151 gtgttggtgtgcttgggggctggggttgatgcggcggtatgcgtagg 36616105  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 5357132 - 5357188
Alignment:
Q  163 ggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagctt 219  Q
    |||||||| |||| | ||| |||||||||||| |||||| || ||||||||||||||    
T  5357132 ggcggttggtgctatttgctcctgctgtcagttggtgttagcagctgccagcagctt 5357188  T

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