View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_71 (Length: 314)
Name: NF3892_low_71
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 52096632 - 52096345
Alignment:
| Q |
19 |
aacgagctactccattggcttgtcgccttacaaaacatacccgaaagttggtgttgattaacaacaattccttaaacttattgatcatacttcctgctgc |
118 |
Q |
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| T |
52096632 |
aacgagctactccattggcttatcgccctacaaaacatacccgaaagttggtgttgattaacaacaattccttaaacttattgatcatacttcctgctgc |
52096533 |
T |
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| Q |
119 |
aaggttctaatgaacaacttccacaacctgcatacaatccatttcgatctgaatatgatgattgttcaataattatagccactgcagtgcatgccatagt |
218 |
Q |
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| T |
52096532 |
aaggttttaatgaacaacttccacaacctgcatacaatccatttcgatctgaatatgatgattgttcaataattatagccactgcagtgcatgccatagt |
52096433 |
T |
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| Q |
219 |
ccataggcttctgcttctgttgttgctgggcttcctgtcatccatggtgtgcatgcttgaaattgaatcatttggcatctttcatctc |
306 |
Q |
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| T |
52096432 |
ccataggcttctgcttctgttgttgctgggcttcctgtcatccatagtgtgcatgcttgaaattgaatcatttggcatctttcatctc |
52096345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 24743401 - 24743344
Alignment:
| Q |
222 |
taggcttctgcttctgttgttgctgggcttcctgtcatccatggtgtgcatgcttgaa |
279 |
Q |
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| T |
24743401 |
taggcttctgcttctgttggtgttcggcttcctgccatccatgttgtgcatgcttgaa |
24743344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 54746564 - 54746481
Alignment:
| Q |
136 |
cttccacaacctgcatacaatccatttcgatctgaatatgatgattgttcaataattatagccactgcagtgcatgccatagtcc |
220 |
Q |
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| T |
54746564 |
cttccacaacctgtatacaatccattttgatctgaatatgatgattgttcaacaattgtagcaac-gcagtgcttgccatagtcc |
54746481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 54763291 - 54763208
Alignment:
| Q |
136 |
cttccacaacctgcatacaatccatttcgatctgaatatgatgattgttcaataattatagccactgcagtgcatgccatagtcc |
220 |
Q |
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| T |
54763291 |
cttccacaacctgtatacaatccattttgatctgaatatgatgattgttcaacaattgtagcaac-gcagtgcttgccatagtcc |
54763208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 54770745 - 54770662
Alignment:
| Q |
136 |
cttccacaacctgcatacaatccatttcgatctgaatatgatgattgttcaataattatagccactgcagtgcatgccatagtcc |
220 |
Q |
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| T |
54770745 |
cttccacaacctgtatacaatccattttgatctgaatatgatgattgttcaacaattgtagcaac-gcagtgcttgccatagtcc |
54770662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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