View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_72 (Length: 309)

Name: NF3892_low_72
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_72
NF3892_low_72
[»] chr5 (5 HSPs)
chr5 (9-206)||(8730620-8730817)
chr5 (117-202)||(24072566-24072651)
chr5 (117-187)||(22675601-22675671)
chr5 (9-73)||(39024627-39024691)
chr5 (14-73)||(39184373-39184433)
[»] chr2 (10 HSPs)
chr2 (9-206)||(25505090-25505287)
chr2 (12-80)||(16959856-16959924)
chr2 (120-187)||(22885435-22885503)
chr2 (12-80)||(4471753-4471821)
chr2 (12-80)||(40704021-40704089)
chr2 (146-201)||(16959726-16959781)
chr2 (12-42)||(3745227-3745257)
chr2 (120-201)||(2062609-2062690)
chr2 (121-202)||(15710400-15710481)
chr2 (20-80)||(29486960-29487020)
[»] chr1 (5 HSPs)
chr1 (12-80)||(17033415-17033483)
chr1 (12-80)||(50589389-50589457)
chr1 (9-80)||(38544918-38544989)
chr1 (120-201)||(50589509-50589590)
chr1 (117-201)||(19598351-19598435)
[»] scaffold1613 (1 HSPs)
scaffold1613 (9-80)||(1197-1268)
[»] chr4 (5 HSPs)
chr4 (9-77)||(12296007-12296075)
chr4 (139-201)||(21988230-21988292)
chr4 (96-200)||(46699052-46699156)
chr4 (12-46)||(38929697-38929731)
chr4 (18-80)||(50102364-50102426)
[»] chr7 (5 HSPs)
chr7 (117-202)||(9106859-9106944)
chr7 (120-202)||(29647562-29647644)
chr7 (10-80)||(38485387-38485457)
chr7 (11-80)||(13311667-13311736)
chr7 (12-45)||(47457199-47457232)
[»] chr3 (5 HSPs)
chr3 (119-198)||(1653188-1653267)
chr3 (17-80)||(27398787-27398850)
chr3 (9-78)||(1653068-1653137)
chr3 (117-186)||(5556308-5556376)
chr3 (9-45)||(25594700-25594736)
[»] chr8 (4 HSPs)
chr8 (10-80)||(10552099-10552169)
chr8 (117-198)||(30236397-30236478)
chr8 (9-45)||(17720885-17720921)
chr8 (20-80)||(35062287-35062347)
[»] scaffold0062 (2 HSPs)
scaffold0062 (121-202)||(46785-46866)
scaffold0062 (121-202)||(59312-59393)
[»] chr6 (3 HSPs)
chr6 (12-73)||(9223878-9223939)
chr6 (121-198)||(12793815-12793892)
chr6 (15-80)||(12793944-12794009)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 8730817 - 8730620
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaatnnnnnnnnnnnnnnngctcagctcaaag 108  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||               ||||||||| |||    
T  8730817 aatcggcccaccagaatccagcacacaataagtaagacagacaaccagatttacggtggggcaaacatcaatcaaaaaggaaaaaaagctcagctctaag 8730718  T
Q  109 gacactccccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaagacatc 206  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8730717 gacactcaccctaaacaccttaacaactcaaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacaacctccaaaagacatc 8730620  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 24072566 - 24072651
Alignment:
Q  117 ccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaaga 202  Q
    ||||||||||||||||||| | ||||| ||||||||| ||||| ||||||| ||||||||||| ||||||| || |||| ||||||    
T  24072566 ccctaaacaccttaacaacccaaaacttaaacaagagctagcgacaacgaatatggacccgaataacagaggcggcctctaaaaga 24072651  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 22675601 - 22675671
Alignment:
Q  117 ccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagag 187  Q
    |||||||||||||  | || | ||||||||| ||||||||||| ||||||| | ||||||||| |||||||    
T  22675601 ccctaaacaccttggccacccaaaactcaaagaagaggtagcgacaacgaataaggacccgaataacagag 22675671  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 39024627 - 39024691
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaa 73  Q
    ||||| |||||||| ||||| ||||||| |||||||| || | || ||||||||||||| |||||    
T  39024627 aatcgccccaccagtatccaacacacaaaaagtaagacaatcgacaagatttgcggtggtgcaaa 39024691  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 39184373 - 39184433
Alignment:
Q  14 gcccaccagaatccagcacacaataagtaagataaacaacca-gatttgcggtggggcaaa 73  Q
    |||||||||||||||||||||||||| ||||| | || |||| | |||||||||| |||||    
T  39184373 gcccaccagaatccagcacacaataaataagacagacgaccatgctttgcggtggtgcaaa 39184433  T

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Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 25505090 - 25505287
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaatnnnnnnnnnnnnnnngctcagctcaaag 108  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||               ||||||||| |||    
T  25505090 aatcggcccaccagaatccagcacacaataagtaagacagacaaccagatttacggtggggcaaacatcaatcaaaaaggaaaaaaagctcagctctaag 25505189  T
Q  109 gacactccccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaagacatc 206  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25505190 gacactcaccctaaacaccttaacaactcaaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacaacctccaaaagacatc 25505287  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 16959924 - 16959856
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||||||||||||||||||| |||||| | |||||  |||||||||||| ||||| ||||||    
T  16959924 cggcccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaatatcaat 16959856  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 22885435 - 22885503
Alignment:
Q  120 taaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacg-aaaatggacccgaaaaacagag 187  Q
    ||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||||||||| |||||||    
T  22885435 taaacaccttagcaacccgaaactcaaacaagaggtagcgacgacgaaaaatggacccgaataacagag 22885503  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 4471821 - 4471753
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||||||||| ||||||||||||||||   || || | ||||||||||| ||||||||||||    
T  4471821 cggcccaccagaatccatcacacaataagtaagactgacgacaaaatttgcggtggtgcaaacatcaat 4471753  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 40704089 - 40704021
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||||||||||||||||||| ||| || |||| ||  |||||||||||| |||||| |||||    
T  40704089 cggcccaccagaatccagcacacaatatgtatgacaaacgacatgatttgcggtggtgcaaacctcaat 40704021  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 16959781 - 16959726
Alignment:
Q  146 aacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaag 201  Q
    |||||||||||||| ||| ||| ||||||||||| ||||||| || ||||||||||    
T  16959781 aacaagaggtagcgacaaggaatatggacccgaataacagaggcggcctccaaaag 16959726  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 3745257 - 3745227
Alignment:
Q  12 cggcccaccagaatccagcacacaataagta 42  Q
    |||||||||||||||||||||||||||||||    
T  3745257 cggcccaccagaatccagcacacaataagta 3745227  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 2062690 - 2062609
Alignment:
Q  120 taaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaag 201  Q
    ||||||||| | |||| | |||||||||| |||||||||  ||| ||| |||||||||||  |||||| | |||||||||||    
T  2062690 taaacacctaagcaacccaaaactcaaacgagaggtagcaacaatgaatatggacccgaatcacagaggcaacctccaaaag 2062609  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 15710481 - 15710400
Alignment:
Q  121 aaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaaga 202  Q
    ||||||||||||||  | | ||||||||||||| ||||| | ||| | ||| ||||||| ||| ||| ||||||||||||||    
T  15710481 aaacaccttaacaatccaatactcaaacaagagctagcgacgacggatatgaacccgaataacggaggcgacctccaaaaga 15710400  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 29487020 - 29486960
Alignment:
Q  20 cagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||||||||| |||||| | | |||||  || ||||||||| ||||||||||||    
T  29487020 cagaatccagcacacaacaagtaaaacagacaacatgaattgcggtggtgcaaacatcaat 29486960  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 17033483 - 17033415
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    |||||||||||||||||||||||||||||||||| |||| || ||||||| ||||| ||||||||||||    
T  17033483 cggcccaccagaatccagcacacaataagtaagacaaacgacaagatttgtggtggtgcaaacatcaat 17033415  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 50589389 - 50589457
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||||||||||||||||||| |||||| | |||||  |||||||||||| ||||||||||||    
T  50589389 cggcccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaat 50589457  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 38544918 - 38544989
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||| |||||||||||||||||| |||||| |||| ||  |||||||||||| ||||||||||||    
T  38544918 aatcggcccactagaatccagcacacaatatgtaagacaaacgacatgatttgcggtggtgcaaacatcaat 38544989  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 50589509 - 50589590
Alignment:
Q  120 taaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaag 201  Q
    ||||||| || ||||| | |||||||| ||||||| |||| ||| ||| ||||||||||| ||||||| || ||||||||||    
T  50589509 taaacacattcacaacccaaaactcaagcaagaggcagcgacaaggaatatggacccgaataacagaggcggcctccaaaag 50589590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 19598435 - 19598351
Alignment:
Q  117 ccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaag 201  Q
    |||||||||||||| | || | |||||||||| ||| |||||| ||||||| ||||||| ||| ||||||| ||  |||||||||    
T  19598435 ccctaaacaccttagccacccaaaactcaaactagatgtagcgacaacgaatatggacctgaataacagaggcggtctccaaaag 19598351  T

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Target: scaffold1613 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 1197 - 1268
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||| |||||||||||||||||| |||||| |||| ||  |||||||||||| ||||||||||||    
T  1197 aatcggcccactagaatccagcacacaatatgtaagacaaacgacatgatttgcggtggtgcaaacatcaat 1268  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 12296075 - 12296007
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatc 77  Q
    |||||||||||||||||||||||||||||| |||||| | || || | ||||||||||| |||||||||    
T  12296075 aatcggcccaccagaatccagcacacaatatgtaagacagacgactaaatttgcggtggtgcaaacatc 12296007  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 21988230 - 21988292
Alignment:
Q  139 aaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaag 201  Q
    ||||||||||||||||||||| ||||||| ||||||| ||| |||| |||||| |||||||||    
T  21988230 aaactcaaacaagaggtagcgacaacgaatatggacctgaataacatagacgatctccaaaag 21988292  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 46699052 - 46699156
Alignment:
Q  96 gctcagctcaaaggacactccccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctc 195  Q
    ||||||||| |||||||| | ||| |||||||||| |||    ||||||||||||||| ||||| |||| || ||||||| ||| |||||||  | ||||    
T  46699052 gctcagctcgaaggacacacaccccaaacaccttagcaatcaaaaactcaaacaagagatagcgacaacaaatatggacctgaataacagaggtggcctc 46699151  T
Q  196 caaaa 200  Q
    |||||    
T  46699152 caaaa 46699156  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 38929731 - 38929697
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaagat 46  Q
    ||||||||||||||||||||||||| |||||||||    
T  38929731 cggcccaccagaatccagcacacaaaaagtaagat 38929697  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 50102426 - 50102364
Alignment:
Q  18 accagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||||||||||||| |||||| | || || | |||| |||||| ||||||||||||    
T  50102426 accagaatccagcacacaatatgtaagacagacgacaaaatttacggtggtgcaaacatcaat 50102364  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 9106944 - 9106859
Alignment:
Q  117 ccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaaga 202  Q
    ||||||||||||||||| |   ||||||||||||||| ||||| | ||||||||||||| ||| ||||||| || |||| ||||||    
T  9106944 ccctaaacaccttaacaccctaaaactcaaacaagagctagcgacgacgaaaatggacctgaataacagaggcggcctctaaaaga 9106859  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 29647644 - 29647562
Alignment:
Q  120 taaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaaga 202  Q
    |||||||||||||||||| |||||||||| | || ||||| ||||||| ||| ||  ||| ||||||| || |||||||||||    
T  29647644 taaacaccttaacaactcaaaactcaaaccaaagttagcgacaacgaatatgaacgtgaataacagaggcggcctccaaaaga 29647562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 38485457 - 38485387
Alignment:
Q  10 atcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||| || ||||||||||||||||||||||| | || ||  || ||||||||| ||||||||||||    
T  38485457 atcggcccatcaaaatccagcacacaataagtaagacagacgacgtgacttgcggtggagcaaacatcaat 38485387  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 13311736 - 13311667
Alignment:
Q  11 tcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    |||||||||||||||||||||||||| | |||||| | || | | |||  ||||||| ||||||||||||    
T  13311736 tcggcccaccagaatccagcacacaaaatgtaagacagacgaactgataagcggtggtgcaaacatcaat 13311667  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 47457199 - 47457232
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaaga 45  Q
    ||||||||||||||||||||||||| ||||||||    
T  47457199 cggcccaccagaatccagcacacaaaaagtaaga 47457232  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 1653188 - 1653267
Alignment:
Q  119 ctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaa 198  Q
    ||||||||| |||||||   ||||||||||||||| ||||| ||||||  ||||||||||| ||||||| | ||||||||    
T  1653188 ctaaacaccataacaacctaaaactcaaacaagagctagcgacaacgagtatggacccgaataacagaggcaacctccaa 1653267  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 27398850 - 27398787
Alignment:
Q  17 caccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    |||||||||||||||||||||| |||||| || ||||  ||| ||| |||| ||||||||||||    
T  27398850 caccagaatccagcacacaatatgtaagacaatcaacatgatatgcagtggtgcaaacatcaat 27398787  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 1653068 - 1653137
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatca 78  Q
    |||||||||| |||||| ||||||||||||||||||| | ||| |  |||||||| | | ||||||||||    
T  1653068 aatcggcccatcagaattcagcacacaataagtaagacagacagcatgatttgcgatagagcaaacatca 1653137  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 5556376 - 5556308
Alignment:
Q  117 ccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacaga 186  Q
    ||||||||||||||||| | | ||||| |||| | || ||||| |||| |||||||||||||||||||||    
T  5556376 ccctaaacaccttaacatccc-aaacttaaacgatagctagcgacaacaaaaatggacccgaaaaacaga 5556308  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 25594700 - 25594736
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaaga 45  Q
    |||||||||| |||||||||||| |||||||||||||    
T  25594700 aatcggcccatcagaatccagcatacaataagtaaga 25594736  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 10552169 - 10552099
Alignment:
Q  10 atcggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||| || ||||||||||||||||||||||| | || ||  || ||||||||| ||||||||||||    
T  10552169 atcggcccatcaaaatccagcacacaataagtaagacagacgacgtgacttgcggtggagcaaacatcaat 10552099  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 30236397 - 30236478
Alignment:
Q  117 ccctaaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaa 198  Q
    ||||||||||||| ||||| |  |||||||| ||||| ||||| ||||||  ||| ||||||||||||||| || |||||||    
T  30236397 ccctaaacaccttgacaacccacaactcaaataagagctagcgacaacgagtatgaacccgaaaaacagaggcggcctccaa 30236478  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 17720885 - 17720921
Alignment:
Q  9 aatcggcccaccagaatccagcacacaataagtaaga 45  Q
    |||||||||||||||||||||||||||| | ||||||    
T  17720885 aatcggcccaccagaatccagcacacaaaatgtaaga 17720921  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 35062347 - 35062287
Alignment:
Q  20 cagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    ||||||||||||||||||||||||||   || ||  || ||||||||| ||||||||||||    
T  35062347 cagaatccagcacacaataagtaagacggacgacgtgacttgcggtggagcaaacatcaat 35062287  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 46866 - 46785
Alignment:
Q  121 aaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaaga 202  Q
    ||||||||||||||  | ||||||||||||||| ||||| | ||| | ||||||||||| ||||||| || ||| |||||||    
T  46866 aaacaccttaacaatccaaaactcaaacaagagctagcgacgacggatatggacccgaataacagaggcggccttcaaaaga 46785  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 59393 - 59312
Alignment:
Q  121 aaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaaaaga 202  Q
    ||||||||||||||  | | ||||||||||||| ||||| | ||| | ||| ||||||| ||| ||| ||||||||||||||    
T  59393 aaacaccttaacaatccaatactcaaacaagagctagcgacgacggatatgaacccgaataacggaggcgacctccaaaaga 59312  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 9223939 - 9223878
Alignment:
Q  12 cggcccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaa 73  Q
    ||||||||||| ||||| ||||||| |||||||| || ||||  |||||||||||| |||||    
T  9223939 cggcccaccagcatccatcacacaaaaagtaagacaatcaacatgatttgcggtggagcaaa 9223878  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 12793892 - 12793815
Alignment:
Q  121 aaacaccttaacaactcgaaactcaaacaagaggtagcgtcaacgaaaatggacccgaaaaacagagacgacctccaa 198  Q
    ||||||||||||||| |  |||| ||||||||| ||| | ||||||  ||||||||||| |||| || ||||||||||    
T  12793892 aaacaccttaacaacccacaacttaaacaagagctagggacaacgagtatggacccgaataacaaaggcgacctccaa 12793815  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 12794009 - 12793944
Alignment:
Q  15 cccaccagaatccagcacacaataagtaagataaacaaccagatttgcggtggggcaaacatcaat 80  Q
    |||| |||||||||||||||||||||||||| |||  ||  |||||| ||||| ||||| ||||||    
T  12794009 cccatcagaatccagcacacaataagtaagacaaatgacatgatttgaggtggagcaaatatcaat 12793944  T

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