View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_73 (Length: 305)
Name: NF3892_low_73
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 46102985 - 46102706
Alignment:
| Q |
18 |
aaatgattatcttagactgaacagggttaagggtagacattttacttttgatggttcatttactgattcagcttctcagctacaagtttatgctactacg |
117 |
Q |
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| T |
46102985 |
aaatgattatcttagactgaacagggttaagggtagacattttacttttgatggttcatttactgattcagcttctcagctacaagtttatgctactacg |
46102886 |
T |
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| Q |
118 |
ttagtttctctcattctctcattttatttctaaatttggagtttaattcataatttactttctataattgtagctatttgcattagttgttttggatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46102885 |
ttagtttctctcattctctcattttatttctaaatttggagtttaattcataatttactttctataattgtagctatttgcattagttgttttggatcaa |
46102786 |
T |
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| Q |
218 |
tcattttaattttaagatagaatttcattaatttagttgtattgtttttaattgcttgcagtttctatttatgatgatgt |
297 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46102785 |
tcattttaattttaagatagaatttcgttaatttagttttattgtttttaattgcttgcagtttctatttatgatgatgt |
46102706 |
T |
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