View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_82 (Length: 292)

Name: NF3892_low_82
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_82
NF3892_low_82
[»] chr5 (6 HSPs)
chr5 (1-275)||(5183981-5184247)
chr5 (201-232)||(13408188-13408219)
chr5 (202-233)||(13641891-13641922)
chr5 (199-227)||(17229379-17229407)
chr5 (199-227)||(37036194-37036222)
chr5 (107-147)||(43105695-43105735)
[»] chr3 (3 HSPs)
chr3 (199-233)||(51842324-51842358)
chr3 (107-179)||(54295569-54295640)
chr3 (199-227)||(30430433-30430461)
[»] chr8 (3 HSPs)
chr8 (201-233)||(11925420-11925452)
chr8 (201-233)||(11946256-11946288)
chr8 (199-233)||(9021758-9021792)
[»] chr7 (1 HSPs)
chr7 (107-147)||(16371912-16371952)
[»] chr1 (2 HSPs)
chr1 (89-144)||(2638056-2638111)
chr1 (199-233)||(9479080-9479114)
[»] chr4 (4 HSPs)
chr4 (199-233)||(25810771-25810805)
chr4 (199-233)||(50683357-50683391)
chr4 (199-227)||(12591370-12591398)
chr4 (199-227)||(49458927-49458955)
[»] chr2 (2 HSPs)
chr2 (199-227)||(26423626-26423654)
chr2 (201-233)||(37342597-37342629)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 5183981 - 5184247
Alignment:
Q  1 caattttttctataacaaaatttagagagtcaaatannnnnnnn---gtccctataagtatttcttcatcttttagtctccnnnnnnntttatcaccatt 97  Q
    ||||||||||||||||||||||||||||||||||||           ||| ||||||||||||||||||||||||||  |        ||||||||||||    
T  5183981 caattttttctataacaaaatttagagagtcaaatatgtttttttttgtctctataagtatttcttcatcttttagttccaaaaaaaatttatcaccatt 5184080  T
Q  98 ttttgtatatgcttttaagtcaactcatatgtgttattcaaaattttgaannnnnnncgcaattatgtttagaatattataaaaagtctctaannnnnnn 197  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||           
T  5184081 ttttttatatgcttttaagtcaattcatatgtgttattcaaaattttgaatttttttcgcaattatgtttagaatattataaaaagtctctaattttttt 5184180  T
Q  198 naacaaaacatgaattaaatatgaattttatgttttgatagtgatgacctcgagagttggcatatcaaatcttgaata 275  Q
     ||||||||           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  5184181 taacaaaac-----------atgaattttatgttttgataatgatgacctcgagaggtggcatatcaaatcttgaata 5184247  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 13408219 - 13408188
Alignment:
Q  201 caaaacatgaattaaatatgaattttatgttt 232  Q
    ||||||||||||||||||||||||||||||||    
T  13408219 caaaacatgaattaaatatgaattttatgttt 13408188  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 233
Target Start/End: Complemental strand, 13641922 - 13641891
Alignment:
Q  202 aaaacatgaattaaatatgaattttatgtttt 233  Q
    ||||||||||||||||||||||||||||||||    
T  13641922 aaaacatgaattaaatatgaattttatgtttt 13641891  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 17229379 - 17229407
Alignment:
Q  199 aacaaaacatgaattaaatatgaatttta 227  Q
    |||||||||||||||||||||||||||||    
T  17229379 aacaaaacatgaattaaatatgaatttta 17229407  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 37036222 - 37036194
Alignment:
Q  199 aacaaaacatgaattaaatatgaatttta 227  Q
    |||||||||||||||||||||||||||||    
T  37036222 aacaaaacatgaattaaatatgaatttta 37036194  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 43105735 - 43105695
Alignment:
Q  107 tgcttttaagtcaactcatatgtgttattcaaaattttgaa 147  Q
    |||||||||||||| |||||||| ||| |||||||||||||    
T  43105735 tgcttttaagtcaaatcatatgtattaatcaaaattttgaa 43105695  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 51842358 - 51842324
Alignment:
Q  199 aacaaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||||||||||||||||||||||||||||    
T  51842358 aacaaaacatgaattaaatatgaattttatgtttt 51842324  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 54295640 - 54295569
Alignment:
Q  107 tgcttttaagtcaactcatatgtgttattcaaaattttgaannnnnnncgcaattatgtttagaatattataa 179  Q
    ||||||||||||||||||||||| | ||| |||||||||||       |||||||||||||||||||| ||||    
T  54295640 tgcttttaagtcaactcatatgtatcatttaaaattttgaa-ttttttcgcaattatgtttagaatatgataa 54295569  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 30430433 - 30430461
Alignment:
Q  199 aacaaaacatgaattaaatatgaatttta 227  Q
    |||||||||||||||||||||||||||||    
T  30430433 aacaaaacatgaattaaatatgaatttta 30430461  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 11925420 - 11925452
Alignment:
Q  201 caaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11925420 caaaacatgaattaaatatgaattttatgtttt 11925452  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 11946288 - 11946256
Alignment:
Q  201 caaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11946288 caaaacatgaattaaatatgaattttatgtttt 11946256  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 9021792 - 9021758
Alignment:
Q  199 aacaaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||| ||||||||||||||||||||||||    
T  9021792 aacaaaacataaattaaatatgaattttatgtttt 9021758  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 16371952 - 16371912
Alignment:
Q  107 tgcttttaagtcaactcatatgtgttattcaaaattttgaa 147  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  16371952 tgcttttaagtcaactcatatgtattatttaaaattttgaa 16371912  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 2638056 - 2638111
Alignment:
Q  89 atcaccattttttgtatatgcttttaagtcaactcatatgtgttattcaaaatttt 144  Q
    ||||||||||||  ||| ||||||||||||||||||||||| |||||  |||||||    
T  2638056 atcaccatttttgatatttgcttttaagtcaactcatatgtattatttgaaatttt 2638111  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 9479080 - 9479114
Alignment:
Q  199 aacaaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||||||||||||||||||||||| ||||    
T  9479080 aacaaaacatgaattaaatatgaattttatatttt 9479114  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 25810771 - 25810805
Alignment:
Q  199 aacaaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||||||||||||||||||||||| ||||    
T  25810771 aacaaaacatgaattaaatatgaattttatatttt 25810805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 50683357 - 50683391
Alignment:
Q  199 aacaaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||||||||||||||||||||||| ||||    
T  50683357 aacaaaacatgaattaaatatgaattttatatttt 50683391  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 12591370 - 12591398
Alignment:
Q  199 aacaaaacatgaattaaatatgaatttta 227  Q
    |||||||||||||||||||||||||||||    
T  12591370 aacaaaacatgaattaaatatgaatttta 12591398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 49458955 - 49458927
Alignment:
Q  199 aacaaaacatgaattaaatatgaatttta 227  Q
    |||||||||||||||||||||||||||||    
T  49458955 aacaaaacatgaattaaatatgaatttta 49458927  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 26423626 - 26423654
Alignment:
Q  199 aacaaaacatgaattaaatatgaatttta 227  Q
    |||||||||||||||||||||||||||||    
T  26423626 aacaaaacatgaattaaatatgaatttta 26423654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 37342597 - 37342629
Alignment:
Q  201 caaaacatgaattaaatatgaattttatgtttt 233  Q
    |||||||||||||||||||||||||||| ||||    
T  37342597 caaaacatgaattaaatatgaattttatatttt 37342629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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