View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_83 (Length: 291)
Name: NF3892_low_83
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 6465962 - 6465907
Alignment:
| Q |
216 |
gtctcataataattgttgtatttgacaattttacaaggcttaacaaaaactcataa |
271 |
Q |
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| T |
6465962 |
gtctcataataattgttgtatttgacaattttacacaggttaacaaaaactcataa |
6465907 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 32240048 - 32240084
Alignment:
| Q |
215 |
tgtctcataataattgttgtatttgacaattttacaa |
251 |
Q |
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|||||||||||| ||||||||||||||||||| |||| |
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| T |
32240048 |
tgtctcataatatttgttgtatttgacaatttcacaa |
32240084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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