View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_84 (Length: 290)

Name: NF3892_low_84
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_84
NF3892_low_84
[»] chr6 (10 HSPs)
chr6 (7-279)||(1459608-1459880)
chr6 (16-279)||(1470990-1471253)
chr6 (16-278)||(7564819-7565081)
chr6 (84-278)||(370853-371047)
chr6 (153-278)||(176198-176317)
chr6 (140-211)||(1442234-1442305)
chr6 (153-212)||(9819957-9820016)
chr6 (153-212)||(9825637-9825696)
chr6 (30-78)||(176039-176087)
chr6 (85-117)||(9825729-9825761)
[»] chr4 (1 HSPs)
chr4 (91-224)||(55419578-55419711)
[»] chr7 (1 HSPs)
chr7 (91-196)||(3926855-3926960)
[»] scaffold0200 (1 HSPs)
scaffold0200 (158-210)||(903-955)
[»] chr5 (1 HSPs)
chr5 (158-210)||(41973595-41973647)
[»] chr3 (1 HSPs)
chr3 (152-192)||(2631220-2631260)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 1459880 - 1459608
Alignment:
Q  7 gttagtaccttaggtaacgatttttggagaacaattccagacttcccttctcaactcatgggtcaacccgaaagacatccaggaaaatttgtaagtggca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1459880 gttagtaccttaggtaacgatttttggagaacaattccagacttcccttctcaaatcatgggtcaacccgaaagacatccaggaaaatttgtaagtggca 1459781  T
Q  107 ccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459780 ccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaa 1459681  T
Q  207 ttatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcat 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459680 ttatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcat 1459608  T

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Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 1471253 - 1470990
Alignment:
Q  16 ttaggtaacgatttttggagaacaattccagacttcccttctcaactcatgggtcaacccgaaagacatccaggaaaatttgtaagtggcaccattaatt 115  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |  ||   |  ||||||||| |||| ||||||||||    
T  1471253 ttaggtaacaatttttggagaacgattcaagacttcccttctcagctcatgggtcaacccgaagggtatatggcgaaatttgtatgtggtaccattaatt 1471154  T
Q  116 gggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggttt 215  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||    
T  1471153 gggtcgtactagatcaagagaatgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatgattt 1471054  T
Q  216 agatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcat 279  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  1471053 agatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcat 1470990  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 7565081 - 7564819
Alignment:
Q  16 ttaggtaacgatttttggagaacaattccagacttcccttctcaactcatgggtcaacccgaaagacatccaggaaaatttgtaagtggcaccattaatt 115  Q
    ||||||| | || |||||||||  |||||||||||||||||| ||  || ||||  ||| ||| ||| |   || ||||||||||||||| ||||| |||    
T  7565081 ttaggtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctgaaggacgtgttgggaaatttgtaagtggcgccattcatt 7564982  T
Q  116 gggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggttt 215  Q
    ||||||||   |||| ||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  |||||||| |    
T  7564981 gggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgt 7564882  T
Q  216 agatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctca 278  Q
      |  ||| ||||| | |||||||||| ||||||| |||||||| |||||| |||||||||||    
T  7564881 tcaccaacgtctgcgttactttagcttaggggtttgtagggattgcttatgggtccttgctca 7564819  T

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Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 84 - 278
Target Start/End: Complemental strand, 371047 - 370853
Alignment:
Q  84 tccaggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtct 183  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||  | ||||  ||  |||| |||||||||||||||||||||||| ||| |||| |    
T  371047 tccaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggtcattctttctcttgatttagaaaaagagtat 370948  T
Q  184 tatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctca 278  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||| | | ||   ||||| ||||| |||||||| ||||||| ||||||||||    
T  370947 tatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgcttatgcatccttgctca 370853  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 278
Target Start/End: Original strand, 176198 - 176317
Alignment:
Q  153 cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttat 252  Q
    ||||||||||||| |||||||||| ||||| ||||  |||||||  |||||  |||||||| ||      |||||||||||||| ||||||||||||| |    
T  176198 cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct 176291  T
Q  253 agggattacttatgcgtccttgctca 278  Q
    ||||||| | ||||||||||||||||    
T  176292 agggattgcctatgcgtccttgctca 176317  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 1442305 - 1442234
Alignment:
Q  140 actcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatg 211  Q
    |||||||| || | ||||| ||||||||||||| ||| |||||||||||||||||||||  |||| ||||||    
T  1442305 actcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg 1442234  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 9820016 - 9819957
Alignment:
Q  153 cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatgg 212  Q
    |||| ||||||||||||| || |  ||||| ||||||||||||||||||||| |||||||    
T  9820016 cattgtttctcttgatttggggagagagtcctatcaagagattttgcagcctgattatgg 9819957  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 9825696 - 9825637
Alignment:
Q  153 cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatgg 212  Q
    |||| ||||||||||||| || |  ||||| ||||||||||||||||||||| |||||||    
T  9825696 cattgtttctcttgatttggggacagagtcctatcaagagattttgcagcctgattatgg 9825637  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 176039 - 176087
Alignment:
Q  30 ttggagaacaattccagacttcccttctcaactcatgggtcaacccgaa 78  Q
    ||||||||  ||||||||||||||||| ||||||||||||  |||||||    
T  176039 ttggagaaggattccagacttcccttcgcaactcatgggtatacccgaa 176087  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 9825761 - 9825729
Alignment:
Q  85 ccaggaaaatttgtaagtggcaccattaattgg 117  Q
    ||||||||||||||||||||||| |||||||||    
T  9825761 ccaggaaaatttgtaagtggcacaattaattgg 9825729  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 55419578 - 55419711
Alignment:
Q  91 aaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaag 190  Q
    |||||||||||||||||||||||||||| ||||   |||| ||||||  ||| |  | |||||||||||||||| ||||||||||| |||||||||||||    
T  55419578 aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag 55419677  T
Q  191 agattttgcagcctaattatggtttagatgaacc 224  Q
     ||||  ||| ||  | |||||| ||||||||||    
T  55419678 tgattccgcatcccgagtatggtctagatgaacc 55419711  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 3926855 - 3926960
Alignment:
Q  91 aaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaag 190  Q
    ||||||||||||||||| |||||||||| ||||    ||| | ||||  |   |||| |||||||||||||||||||||||||||||||||| |||||||    
T  3926855 aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag 3926954  T
Q  191 agattt 196  Q
    ||||||    
T  3926955 agattt 3926960  T

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Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 955 - 903
Alignment:
Q  158 tttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattat 210  Q
    |||||||| ||||||| || ||||||||||||||| |||||||||||||||||    
T  955 tttctcttaatttagggaatgagtcttatcaagaggttttgcagcctaattat 903  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 41973647 - 41973595
Alignment:
Q  158 tttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattat 210  Q
    |||||||| ||||||| || ||||||||||||||| |||||||||||||||||    
T  41973647 tttctcttaatttagggaatgagtcttatcaagaggttttgcagcctaattat 41973595  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 2631220 - 2631260
Alignment:
Q  152 tcattctttctcttgatttaggaaacgagtcttatcaagag 192  Q
    ||||||||||||||||||||| ||| ||||| |||||||||    
T  2631220 tcattctttctcttgatttagaaaatgagtcatatcaagag 2631260  T

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