View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_low_86 (Length: 282)
Name: NF3892_low_86
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_86 |
 | |
|
| [»] scaffold0147 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0147 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 14812 - 14544
Alignment:
| Q |
1 |
gatatactgttccgttatgtccttataatccatgtttgtgctttcaaagttatgtcagtagccaaagttcagtagctttccactggacacaatttttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812 |
gatatactgttccgttatgtccttataatccatgtttgtgctttcaaagttatgtcagtagccaaagttcagtagctttccactggacacaatttttcaa |
14713 |
T |
|
| Q |
101 |
gaaagcaacagataatgccaatatgttgaaagactagtcgctataacttcataatttaggaaagaggtgggtgggagagtcattgaaactatggcaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14712 |
gaaagcaacagataatgccaatatgttgaaagactagtcgctataacttcataatttaggaaagaggtgggtgggagagtcattgaaactatggcaagtg |
14613 |
T |
|
| Q |
201 |
tccaatagggtcattcattgcagtaaatggaatgctctcttctcattgccaactttactatagaatgtg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14612 |
tccaatagggtcattcattgcagtaaatggaatgctctcttctcattgccaactttactatagaatgtg |
14544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University