View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_low_9 (Length: 580)
Name: NF3892_low_9
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 25 - 572
Target Start/End: Original strand, 8729989 - 8730536
Alignment:
| Q |
25 |
gctagctgatatgtaccctcgtgaaggatagatatggattggggttgtggttccaaacttcagagagataagccttggattagatttatttcagcaannn |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8729989 |
gctagctgatatgtaccctcgtgaaggatagatatggattggggttgtggttccaaacttcagagagataagccttggattagatttatttcagcaattt |
8730088 |
T |
|
| Q |
125 |
nnnngtccctcactatcatgacatctgttggttatggtgttcttcacgctgtcaacaccatgaaaatgattttcattattttctacatgctcattaacct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8730089 |
ttttgtccctcactatcatgacatctgttggttatggtgttcttcacgttgtcaacaccatgaaaatgattttcattattttctacatgctctttaacct |
8730188 |
T |
|
| Q |
225 |
tgggtacagatcgcttctggcttggttgttgtttactctggggacggacgccttttccgtgttactggcgatcacctttttacgatctaggttacgtctt |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8730189 |
tgggtacagatcacttctggcttggttggtgtttactctggggacaaacgcctttttcgtgttactggcgatcacctttttacgatctaggttacgtctt |
8730288 |
T |
|
| Q |
325 |
tcacttcagactggcatcgctgcccatgnnnnnnngttgggcttcgtcctcctctggttctatttatgttgctccttgttttcatgtgagacggtttggc |
424 |
Q |
| |
|
||||||||||||||| ||||||||| || ||| ||||||||| |||||||| ||||||| ||||||| | |||||||||||||||| ||||||| |
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|
| T |
8730289 |
tcacttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttttgttgctgcctgttttcatgtgagacagtttggc |
8730388 |
T |
|
| Q |
425 |
ggtgtagttctgtctctatcgttggttggtgggtgtatttattgtggttgcctcttcataatgctatggcgatgttgttgcttaccttggagactttcaa |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8730389 |
agtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggagactttcaa |
8730488 |
T |
|
| Q |
525 |
ctttgttgtcttactcttgtttgccgggttgtagtggtggtgatgatg |
572 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
8730489 |
ctttgttgtcttgctcttgtttgtcgggttgtagtggtggtggtgatg |
8730536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 536
Target Start/End: Complemental strand, 39184794 - 39184668
Alignment:
| Q |
410 |
gtgagacggtttggcggtgtagttctgtctctatcgttggttggtgggtgtatttattgtggttgcctcttcataatgctatggcgatgttgttgcttac |
509 |
Q |
| |
|
||||| ||||||||||| |||||| || |||||||||||| | |||||| |||| | |||| ||| ||||| |||||||||||| ||| | |||| | |
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|
| T |
39184794 |
gtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcgttgtggccgctttc |
39184695 |
T |
|
| Q |
510 |
cttggagactttcaactttgttgtctt |
536 |
Q |
| |
|
|||| || ||||||||||||||||||| |
|
|
| T |
39184694 |
cttgaagtctttcaactttgttgtctt |
39184668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 25 - 572
Target Start/End: Complemental strand, 25505918 - 25505371
Alignment:
| Q |
25 |
gctagctgatatgtaccctcgtgaaggatagatatggattggggttgtggttccaaacttcagagagataagccttggattagatttatttcagcaannn |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25505918 |
gctagctgatatgtaccctcgtgaaggatagatatggattggggttgtggttccaaacttcagagagataagccttggattagatttatttcagcaattt |
25505819 |
T |
|
| Q |
125 |
nnnngtccctcactatcatgacatctgttggttatggtgttcttcacgctgtcaacaccatgaaaatgattttcattattttctacatgctcattaacct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25505818 |
ttttgtccctcactatcatgacatctgttggttatggtgttcttcacgttgtcaacaccatgaaaatgattttcattattttctacatgctctttaacct |
25505719 |
T |
|
| Q |
225 |
tgggtacagatcgcttctggcttggttgttgtttactctggggacggacgccttttccgtgttactggcgatcacctttttacgatctaggttacgtctt |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25505718 |
tgggtacagatcacttctggcttggttggtgtttactctggggacaaacgcctttttcgtgttactggcgatcacctttttacgatctaggttacgtctt |
25505619 |
T |
|
| Q |
325 |
tcacttcagactggcatcgctgcccatgnnnnnnngttgggcttcgtcctcctctggttctatttatgttgctccttgttttcatgtgagacggtttggc |
424 |
Q |
| |
|
||||||||||||||| ||||||||| || ||| ||||||||| |||||||| ||||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
25505618 |
tcacttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttttgttgctgcctgttttcatgtgagacagtttggc |
25505519 |
T |
|
| Q |
425 |
ggtgtagttctgtctctatcgttggttggtgggtgtatttattgtggttgcctcttcataatgctatggcgatgttgttgcttaccttggagactttcaa |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25505518 |
agtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggagactttcaa |
25505419 |
T |
|
| Q |
525 |
ctttgttgtcttactcttgtttgccgggttgtagtggtggtgatgatg |
572 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
25505418 |
ctttgttgtcttgctcttgtttgtcgggttgtagtggtggtggtgatg |
25505371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 657592 - 657382
Alignment:
| Q |
18 |
attacatgctagctgatatgtaccctcgtgaaggatagatatggattggggttgtggttccaaacttcagagagataagcctt-ggattagatttatttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||||||| | |||| |||||||||||||||||| ||||| | ||||||||| |||||| |
|
|
| T |
657592 |
attacatgctagctgatatgtaccctcatgaaggaaagacatggattggagctgtgattccaaacttcagagagacaagccctcggattagatatatttc |
657493 |
T |
|
| Q |
117 |
agcaannnnnnngtccctcactatcatgacatctgttggttatggtgttcttcacgctgtcaacaccatgaaaatgattttcattattttctacatgctc |
216 |
Q |
| |
|
||||| |||| |||||| ||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
657492 |
agcaatttattggtccatcactaccatgacaactgttggttatggtgatcttcatgctgtcaacaccatggaaatgattttcattattttctacatgctc |
657393 |
T |
|
| Q |
217 |
attaaccttgg |
227 |
Q |
| |
|
| |||||||| |
|
|
| T |
657392 |
ttcaaccttgg |
657382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 544
Target Start/End: Complemental strand, 22886012 - 22885900
Alignment:
| Q |
432 |
ttctgtctctatcgttggttggtgggtgtatttattgtggttgcctcttcataatgctatggcgatgttgttgcttaccttggagactttcaactttgtt |
531 |
Q |
| |
|
|||| |||||||| | ||| |||||| |||| |||||| ||| ||||| ||||||| ||||||||| ||||| |||| ||||||||||| ||||| |
|
|
| T |
22886012 |
ttctatctctatcactagtttgtgggtatattcgttgtggctgcttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgtt |
22885913 |
T |
|
| Q |
532 |
gtcttactcttgt |
544 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
22885912 |
gtcttgctcttgt |
22885900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 388 - 536
Target Start/End: Original strand, 17032948 - 17033098
Alignment:
| Q |
388 |
ttatgttgctccttgttttcatg-tgagacggtttggcggtgtagttct-gtctctatcgttggttggtgggtgtatttattgtggttgcctcttcataa |
485 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||| |||||||| | |||||||||| || || |||||| |||| | |||| ||| ||||| || |
|
|
| T |
17032948 |
ttatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattcaacgtggctgcttcttcggaa |
17033047 |
T |
|
| Q |
486 |
tgctatggcgatgttgttgcttaccttggagactttcaactttgttgtctt |
536 |
Q |
| |
|
|||||||||||||| | ||||| |||| ||||| ||||||||||||||||| |
|
|
| T |
17033048 |
tgctatggcgatgtggctgctttccttagagaccttcaactttgttgtctt |
17033098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 417 - 530
Target Start/End: Original strand, 42373640 - 42373752
Alignment:
| Q |
417 |
ggtttggcggtgtagttctgtctctatcgttggttggtgggtgtatttattgtggttgcctcttcataatgctatggcgatgttgttgcttaccttggag |
516 |
Q |
| |
|
|||||| ||| |||||| |||||||||| ||||||| ||||| |||| | ||||| ||| ||||| |||||||||||||||||| || || |||||||| |
|
|
| T |
42373640 |
ggtttgacggcgtagttttgtctctatctttggttg-tgggtatattcactgtggctgcttcttcggaatgctatggcgatgttgctgatttccttggag |
42373738 |
T |
|
| Q |
517 |
actttcaactttgt |
530 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
42373739 |
accttcaactttgt |
42373752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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