View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_91 (Length: 265)
Name: NF3892_low_91
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 20990204 - 20989967
Alignment:
| Q |
19 |
gaaacgccgatgagaaaatgtattgcactgtaattaaaagttatcacatggaaaagaatcttaagaaggcgtcagatctcgtgcaagccatgcaggaaaa |
118 |
Q |
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| T |
20990204 |
gaaacaccgacgagaaaatgtattgcactgtaattaaaagttatcacatggaaaagaatcttaagaaggcgtcagatctcgtgcaagccatgcaggaaaa |
20990105 |
T |
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| Q |
119 |
aggctaccagcctgactttgatatacattggagttgccattgtttttgttggttgatttttatatttgtactacaccgttgttcctattttgattcaaag |
218 |
Q |
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| T |
20990104 |
aggctaccagcctgactttgatatacattggagttgccattgtttttgttggttgatttttatatttgtactacaccgtcgttcctattttgattcaaag |
20990005 |
T |
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| Q |
219 |
gctaggatggagttgcatttcatgttacatttttcttc |
256 |
Q |
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| T |
20990004 |
gctaggatggagttgcatttcatgttacatttttcttc |
20989967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 21001457 - 21001341
Alignment:
| Q |
33 |
aaaatgtattgcactgtaattaaaagttatcacatggaaaagaatcttaagaaggcgtcagatctcgtgcaagccatgcaggaaaaaggctaccagcctg |
132 |
Q |
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| T |
21001457 |
aaaatgtattccactgtaattaaaagttatcacatggaaaagaatcttaagaaggcgtcatatctcgtgcaagccatgcaggaaaaaggctaccagcctg |
21001358 |
T |
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| Q |
133 |
actttgatatacattgg |
149 |
Q |
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| T |
21001357 |
actttgatatacattgg |
21001341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 21001224 - 21001163
Alignment:
| Q |
147 |
tggagttgccattgtttttgttggttgatttttatatttgtactacaccgttgttcctatttt |
209 |
Q |
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| T |
21001224 |
tggagttgccattgtttttgttggttga-ttttatatttgtactacaccaatgttcctatttt |
21001163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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