View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_96 (Length: 260)
Name: NF3892_low_96
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 39509495 - 39509265
Alignment:
| Q |
11 |
cagagaggtgcagtacacagagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaata |
110 |
Q |
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| T |
39509495 |
cagagaggtgcagtacatagagaacctcatgaggatagttctaacagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaata |
39509396 |
T |
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| Q |
111 |
cactgagtgaagtggatgatatgtctatgcctattttgagggttattgatgaatctgatagtgctgggcattctgttttctctgagttgaaccttgatga |
210 |
Q |
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| T |
39509395 |
cactgagtgaagtggatgatatgtctatgtctattttgagggttattgatgaatctgatagtgctgggcattctgttttctctgagttgaaccttgatga |
39509296 |
T |
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| Q |
211 |
tgccagatagattttcatgtcatgtccttca |
241 |
Q |
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| T |
39509295 |
tgccagatagattttcatgtcatgtccttca |
39509265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 39516563 - 39516344
Alignment:
| Q |
11 |
cagagaggtgcagtacacagagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaata |
110 |
Q |
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| T |
39516563 |
cagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtcta |
39516464 |
T |
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| Q |
111 |
cactgagtgaagtggatgatatgtctatgcctattttgagggttattgatgaatctgatagtgctgggcattctgttttctctgagttgaaccttgatga |
210 |
Q |
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| T |
39516463 |
cactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcagattctgttttctctcagttgaaaatagatga |
39516364 |
T |
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| Q |
211 |
tgccagatagattttcatgt |
230 |
Q |
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||| |||||||| ||||||| |
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| T |
39516363 |
tgctagatagatattcatgt |
39516344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 39574392 - 39574293
Alignment:
| Q |
29 |
agagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatg |
128 |
Q |
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|||||||| |||||||||||||||| |||||||| || |||| |||||||||| ||||||| | ||||||||||||| ||||| || ||||||||||| |
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| T |
39574392 |
agagaaccgcatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatg |
39574293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 39578925 - 39578826
Alignment:
| Q |
29 |
agagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatg |
128 |
Q |
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|||||||| |||||||||||||||| |||||||| || |||| |||||||||| ||||||| ||||||||||||||| ||| |||| | ||||||||| |
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| T |
39578925 |
agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatg |
39578826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 39542543 - 39542458
Alignment:
| Q |
43 |
ggatagttctatcagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatg |
128 |
Q |
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| T |
39542543 |
ggatagttctagcagtgcttttgcgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatg |
39542458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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