View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3893_high_1 (Length: 549)
Name: NF3893_high_1
Description: NF3893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3893_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 48890421 - 48889888
Alignment:
| Q |
1 |
aaatcccaaacacgaacgcaactatcttctcccgaactgaccactctttctggctcaataaaagtcaagccatacactccacctaaatgagcccctttta |
100 |
Q |
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| T |
48890421 |
aaatcccaaacacgaacgcaactatcttctcccgaactgaccactctttctggctcaataaaagtcaagccatacactccacctaaatgagcccctttta |
48890322 |
T |
|
| Q |
101 |
tggttctgcggcttgatgctggctttccaatttcgtatacaataacacatgtatcaagtgaaccagtagctaccagtttgctattaggtgaccaagcaag |
200 |
Q |
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| T |
48890321 |
tggttctgcggcttgatgctggctttccaatttcgtatacaataacacatgtatcaagtgaaccagtagctaccagtttgctattaggtgaccaagcaag |
48890222 |
T |
|
| Q |
201 |
acagtttacacgtgcagtgtgaaacaacatgttattaagcaccacctgaaagagaaaggaagatttatttagcaacggcatttttcagtaagttatgaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48890221 |
acagtttacacgtgcagtgtgaaacaacatgttattaagcaccacctgaaagagaaaggaagatttatttagcaacgacatttttcagtaagttatgaca |
48890122 |
T |
|
| Q |
301 |
aaaacaagtgtacatcatgataattgaagcaataatgttacaatcatgagagtataagtcatgtatttctcatttcacataggaaaatttggtatatata |
400 |
Q |
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| T |
48890121 |
aaaacaagtgtacatcatgataattgaagcaataatgttacaatcatgagagtataagtcatgtatttctcatttcacataggaaaatttggtatatata |
48890022 |
T |
|
| Q |
401 |
agacaaacaaagcattcaggcacaagacatttcaacttcatggaacagtcatatcaggctcaagttacctctctggaagcacagtcccacacaacagctt |
500 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890021 |
ggacaaacaaagcattcaggcacaagacatatcaacttcatggaacagtcatatcaggctcaagttacctctctggaagcacagtcccacacaacagctt |
48889922 |
T |
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| Q |
501 |
cacgattaagatcagctgatgcaaacatggaaac |
534 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
48889921 |
cacgatttagatcagctgatgcaaacatggaaac |
48889888 |
T |
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