View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3893_high_2 (Length: 251)
Name: NF3893_high_2
Description: NF3893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3893_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 2134530 - 2134772
Alignment:
| Q |
9 |
agcacagaacccaaagaaactgattttattctttgatcgttttgcatgaagaaaagaagacatttgtatgtttctgctctctgcatgtgtcccaagccta |
108 |
Q |
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| T |
2134530 |
agcacagaacccaaagaaactgattttattctttgatcgttttgcatgaagaaaagaagacatttgtatgtttctgctctctgcatgtgtcccaagccta |
2134629 |
T |
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| Q |
109 |
gatagtgataggtcataagtgcttcaataataagataaagctaaaaacgtaacataacagatcaatttttaaccttgagccaactaggcacattgctctt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2134630 |
gatagtgataggtcataagtgcttcaataataagataaagctaaaaacgtaacataacagatcaatttttaaccttgagccaactaggcacattgctctt |
2134729 |
T |
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| Q |
209 |
gtaccctgttgctaatattattacatcaaattccttttcttgt |
251 |
Q |
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| T |
2134730 |
gtaccctgttgctaatattattgcatcaaattccttttcttgt |
2134772 |
T |
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