View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3893_low_1 (Length: 788)
Name: NF3893_low_1
Description: NF3893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3893_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 47889030 - 47888684
Alignment:
| Q |
19 |
ttcatccatatgtcacaggtttagttggtctaagatatctatttgatgataattaaactaaagtatccttggtatttttattctgttgtctttaatttgg |
118 |
Q |
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| T |
47889030 |
ttcatccatatgtcacaggtttagttggtctaagatatctatttgatgataattaaactaaagtatccttggtatttttattctgctgtctttaatttgg |
47888931 |
T |
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| Q |
119 |
taaatatttttattcacttcggtttgtttttctccccagattggatatctgctgactaatgccgccaatccagttgctccaaagttgactgcaatggatt |
218 |
Q |
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| T |
47888930 |
taaatatttttattcacttcggtttgtttttctccccagattggatatctgctgattaatgccgccaattcagttgctccaaagttgactgcaatggatt |
47888831 |
T |
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| Q |
219 |
caaggtaagaacaaaacatttgcgcctgatttgaaggttaacacagtttttaattattctgatccttgttaaatccttgtcaggttccctttggagcacc |
318 |
Q |
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| T |
47888830 |
caaggtaagaacaaaacatttgcgcctgatttgaaggttaacacagtttttaattattctgatccttgttaaatccttgtcaggttccctttggagcacc |
47888731 |
T |
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| Q |
319 |
ttcttggaaggaaaccagcttacaaagaaaacaaaagtgatacagaa |
365 |
Q |
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| T |
47888730 |
ttcttggaaggaaaccagcttacaaagaaaacaaaagtgatacagaa |
47888684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 601 - 776
Target Start/End: Complemental strand, 47888448 - 47888273
Alignment:
| Q |
601 |
ctccccagccaccagcaaagaagcggaagtgagaattatattagtagggaattggttctatggtttgcatttgtgtcaagcttagtgattaggactgata |
700 |
Q |
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| T |
47888448 |
ctccccagccaccagcaaagaagaggaagtgagaattatattagtaggaaattggttctatggtttgcatttgtgtcaagcttagtgattaggactgata |
47888349 |
T |
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| Q |
701 |
aattagctatcttagtaagtgaacctttgtcgcgttatgtcaatgatgatgattgttatatcaatatttctctctg |
776 |
Q |
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| T |
47888348 |
aattagctatcttagtaagtgaacctttgtcgcgttatgtcaatgatgatgattgttatatcaatatttctctctg |
47888273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 418 - 498
Target Start/End: Complemental strand, 47888631 - 47888551
Alignment:
| Q |
418 |
gagaagaggaagactactcgggtgatgaaggcgaggaagaaggggatcccgaggatgatcctgaggctaacggtgcaggag |
498 |
Q |
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| T |
47888631 |
gagaagaggaagactactcgggtgatgaaggcgaggaagaaggggatcccgaggatgatcctgaggctaacggtgcaggag |
47888551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 16361973 - 16362076
Alignment:
| Q |
604 |
cccagccaccagcaaagaagcggaagtgagaattatattagtagggaattggttctatggtttgcatttgtgtcaagcttagtgattaggactgataaat |
703 |
Q |
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| T |
16361973 |
cccagccaccagcaaagaagagtaagtgagaattatattagtgtgaagttggttcaatggtttgcatttgtgtcaagcttagtgattaggactgataaat |
16362072 |
T |
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| Q |
704 |
tagc |
707 |
Q |
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|||| |
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| T |
16362073 |
tagc |
16362076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 713 - 773
Target Start/End: Original strand, 16365373 - 16365433
Alignment:
| Q |
713 |
tagtaagtgaacctttgtcgcgttatgtcaatgatgatgattgttatatcaatatttctct |
773 |
Q |
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| T |
16365373 |
tagtaattgaacctgcgtcgcgttatgtcaatgatgatgattgttatatcaatatttctct |
16365433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 719 - 767
Target Start/End: Complemental strand, 27841231 - 27841183
Alignment:
| Q |
719 |
gtgaacctttgtcgcgttatgtcaatgatgatgattgttatatcaatat |
767 |
Q |
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| T |
27841231 |
gtgaacctgcgtcgcgttatgtcaatgatgatgattgttatatcaatat |
27841183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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